Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6585g00001 ATGTTCAAGTTTCTATTGCAGCATTGTTCTCTAGTTACAGGCCACCTGACAACTAAAGTTGACGTATTCAGCTTTGGTGTAATATTGATGGAGCTGATAACTGGAAGAAAAGCAATTGACGACAGCCAACCTGAGGATAGCATGCATATTGTACCATGGTTCCGAAGAGTGCATTTAAACAAGGACTCGTTGCACAAGGTGATTGACCCCGCAATTGATCTCAATGACGAAACACTTGCTAGTATTCACACTGTAGCAGAGCTAGCTGGTCATTGCAGTGCAGAAGAGCCATATCAAAGGCCTAACATGACTCATGTGGTGCATGTGCTTTTAAATCTTGTAGATCAATGGAAACCATCTGATTCAAATTCTGAAGATATATGA 384 0.4115 MFKFLLQHCSLVTGHLTTKVDVFSFGVILMELITGRKAIDDSQPEDSMHIVPWFRRVHLNKDSLHKVIDPAIDLNDETLASIHTVAELAGHCSAEEPYQRPNMTHVVHVLLNLVDQWKPSDSNSEDI 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6585g00001 127 Pfam Protein tyrosine and serine/threonine kinase 11 110 IPR001245 GO:0004672|GO:0006468
Trme6585g00001 127 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme6585g00001 127 SUPERFAMILY Protein kinase-like (PK-like) 12 119 IPR011009 -
Trme6585g00001 127 Gene3D Transferase(Phosphotransferase) domain 1 6 126 - -
Trme6585g00001 127 PANTHER OSJNBA0070M12.3 PROTEIN 6 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6585g00001 Trme-Chr6585 942 1765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6585g00001 12 110 Receptor kinase-like Gene Family AT4G02010 42.424 1.28e-18 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme6585g00001 PK_Tyr_Ser-Thr 1.5e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6585g00001 K00924 - cit:102619874 189.504