Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme65844g00001 CAGGTCGTTGAGCTTCTTCACTCGCCGGAGATTACCGGAAAACCGCCGAAACCCTATCCTCTAACTTGCGACACCGGTAATTTGACCTTCCCTTCCAACACCACCGCAAGATTCTCCGTGTTCGCCGGAGAGAATAAGAATACAGCGAACGTTAACTCACTGCTTCCGGAGGTGAAGGATGAGGTACCGGAGACTGAAGGAGGTGGTTGTGTCTCTGATCCAACAATCGAGAACAAGAAATCCAAAGGTGCGAAGAGGAAAGAGCGAGAGAAGAAGGTTAAAGTGTCGTCTAAGAAAAGCAAAAGCATCGCCGATGAGAATTCCGGCAACGGCGGCGATGAGCTTCCGTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCTACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGAATGAAACTGTTGCAAGAGCTGGTCCCCGGTTGCAACAAGGTTGGTCCCTATTCTTTCCTTTTAAGATGTTGA 507 0.4931 QVVELLHSPEITGKPPKPYPLTCDTGNLTFPSNTTARFSVFAGENKNTANVNSLLPEVKDEVPETEGGGCVSDPTIENKKSKGAKRKEREKKVKVSSKKSKSIADENSGNGGDELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKVGPYSFLLRC 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme65844g00001 168 MobiDBLite consensus disorder prediction 58 116 - -
Trme65844g00001 168 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 168 IPR011598 GO:0046983
Trme65844g00001 168 Pfam Helix-loop-helix DNA-binding domain 130 154 IPR011598 GO:0046983
Trme65844g00001 168 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 160 IPR036638 GO:0046983
Trme65844g00001 168 Gene3D - 117 162 IPR036638 GO:0046983
Trme65844g00001 168 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 63 159 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme65844g00001 Trme-Chr65844 1 706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme65844g00001 1 166 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 47.236 3.28e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme65844g00001 HLH 4.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme65844g00001 - - vvo:131637109 211.075