Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6583g00001 ATGGAATGCCGTACAACTCATGGCCAGCTGGTTGTCCCTGTATTTTACGATGTTGATCCATCGGATATGCGCCACCTGAAGGGTAATTTTGTAATAAAATCGGCAGATACTGCAAGAAGAAACTCAAGAGATGAAAAGATGATGTTTAGTTGCAGGAATGCACTCGCCGGAGCTGCTATGTTGCGTGGTTGGGAATCCAACAGTTACAGGAATGAAGCTGAACTAGTGAAGCAAATTGTTAATGACGTTTTGAGAAAGCTAAACAGCAAATTATTGTCTATTACCGAATTTCCAGTTGGACTGGAAACCCGTGTGCAAAAAGTGACTGACTTTATTGAAACTCAATCAAGCAAAGTATGCTTGATAGGGATCTGCGGAAGAGGTGGATCTGGTAAAACAACCATAGCCAGAACCATCTACAATCAACTTCATTGCAAATTTGTGTATCACAGTTTCATTGGAAATATGAGAGAAGTTTGTAAAGAAGGTGATAGAGGGATGATTTCTTTACAACAACAGCTACTTCCAGTTGTCCTGAAAACAAAGGCGAAAAAGATACAAAGCACTGCATTTGAGACGGCTGAGATGAAAAAAAGAATTCAGGGGAAAAAGGTACTCGTTGTACTTGATGATGTGACCGCACCTGAACAATTAGAAGCGCTATGTGGAAATCTTAAATTGTTTGGTCCAGGAAGTGTATTAATGGTTGCAACTAGAGATGCAAGCATTCTTTGTTCATTTAAGGTCGATTATGTGTTTACAATGAAGGAAATGGACGAAAATGAGTCCCTTGAGCTTTTTAGTTGGCATGCTTTTAGACGACCTGGCCCATTAAAGGGCTTCCGTGAACTCTCCCAAAACATAGTTGCTTGTTCTGGTCGATTACTGGTTGATCTTGAAGTCCTTGGTTCTTACTTATTTCAGAGGACAAAACAAGAATGGAAAAGTGCACTCTCAACACTAAAAAGAATAAACTATGATGGTTCAATGGATGATATGGAAAAGGATACATTTCTTAACATATGTTGTTTCTTTGTTGGTAAGGACAGAGCCTATGTTACAGAGATACTAAATGCCTGTGGTCTTTTTGCTGAATTTGGAATAGCCTTCCTTATAGAGCGGGGCCTCCTAAAAGTTGAGAAGAATAACAAGCTTGGAATGGATGATTTAGTAAGAGACTTGGGAAGAGAAATTGTTCGCAGAGGTTCCCCCAAAGAACCTGGGATGCGTAGTCGGTTGTGGTTTCATGAGGATATACATAATGTTTTGACCACAAATTCTGGAACAAAAACTGTAGAGGGATTGGTTTTGAAGTCGCAAAGCACTGACAGAGTTTTCTTCAGTACCAATTCTTTCAAGAGGATGAAGAATCTCAAACTTCTACAACTTGATCATGTTGACCTCACTGGAGATTATAGAAACCTTTCTAAAAAACTGAGATGGGTCCATTGGCAAGGATTTACCTTCAACTATATACCTGATGACTTTCATCAAGGAAATCTAGTTGTTTTTGAATTAAAACACAGCAATATTATACAAGTATGGAATGAAACCAAGGTATAA 1563 0.389 MECRTTHGQLVVPVFYDVDPSDMRHLKGNFVIKSADTARRNSRDEKMMFSCRNALAGAAMLRGWESNSYRNEAELVKQIVNDVLRKLNSKLLSITEFPVGLETRVQKVTDFIETQSSKVCLIGICGRGGSGKTTIARTIYNQLHCKFVYHSFIGNMREVCKEGDRGMISLQQQLLPVVLKTKAKKIQSTAFETAEMKKRIQGKKVLVVLDDVTAPEQLEALCGNLKLFGPGSVLMVATRDASILCSFKVDYVFTMKEMDENESLELFSWHAFRRPGPLKGFRELSQNIVACSGRLLVDLEVLGSYLFQRTKQEWKSALSTLKRINYDGSMDDMEKDTFLNICCFFVGKDRAYVTEILNACGLFAEFGIAFLIERGLLKVEKNNKLGMDDLVRDLGREIVRRGSPKEPGMRSRLWFHEDIHNVLTTNSGTKTVEGLVLKSQSTDRVFFSTNSFKRMKNLKLLQLDHVDLTGDYRNLSKKLRWVHWQGFTFNYIPDDFHQGNLVVFELKHSNIIQVWNETKV 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6583g00001 520 SUPERFAMILY "Winged helix" DNA-binding domain 324 423 IPR036390 -
Trme6583g00001 520 ProSiteProfiles TIR domain profile. 1 87 IPR000157 GO:0007165
Trme6583g00001 520 Gene3D - 257 338 IPR042197 -
Trme6583g00001 520 Gene3D - 1 85 IPR035897 -
Trme6583g00001 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 328 IPR027417 -
Trme6583g00001 520 Pfam TIR domain 1 95 IPR000157 GO:0007165
Trme6583g00001 520 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 514 IPR044974 GO:0006952
Trme6583g00001 520 PRINTS Disease resistance protein signature 199 213 - -
Trme6583g00001 520 PRINTS Disease resistance protein signature 292 306 - -
Trme6583g00001 520 PRINTS Disease resistance protein signature 453 469 - -
Trme6583g00001 520 PRINTS Disease resistance protein signature 121 136 - -
Trme6583g00001 520 Gene3D - 86 252 IPR027417 -
Trme6583g00001 520 Pfam NB-ARC domain 102 327 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6583g00001 Trme-Chr6583 49 1926 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6583g00001 1 520 WRKY Transcription Factor Family AT4G12020 28.545 2.25e-55 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6583g00001 - - cam:101511388 637.876