Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme65819g00001 ATGGTCACAGCCCAAGGTCGAGAAGACCCAAACCAGAACACTGCAACTTCAATTCAGCAATGTAACATAATACCAAGCTCAGACCTCAAGCCTGTGCAAGGCACCATCAAAACATACCTCGGCCGCCCATGGAAGAAATACTCCAGGACAGTTGTGCTGCAATCCGTCGTGGACGGCCACATTGACCCGGCAGGATGGGCTGAATGGGATGCCGCAAGCAAGGACTTTCTCCAAACATTGTATTACGGAGAGTACTTGAACAGTGGAGCAGGTGCTGGTACCAGCAAGAGAGTAACTTGGCCTGGTTTTCATATCATCAAAAGTGCTGCAGAGGCTAGCAAGTTTACAGTAGCACAACTCATCCAAGGAAATGTTTGGTTGAAGAATACTGGAGTGGCCTTCATCGAAGGTCTGTAG 417 0.4892 MVTAQGREDPNQNTATSIQQCNIIPSSDLKPVQGTIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYLNSGAGAGTSKRVTWPGFHIIKSAAEASKFTVAQLIQGNVWLKNTGVAFIEGL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme65819g00001 138 Pfam Pectinesterase 1 124 IPR000070 GO:0030599|GO:0042545
Trme65819g00001 138 PANTHER PECTINESTERASE 1 128 - -
Trme65819g00001 138 SUPERFAMILY Pectin lyase-like 2 137 IPR011050 -
Trme65819g00001 138 Gene3D - 1 138 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme65819g00001 Trme-Chr65819 18 434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme65819g00001 1 138 Carbohydrate Esterase AT1G11580 66.187 2.98e-60 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme65819g00001 K01051 - gmx:100815836 256.144