Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme65815g00001 ATGTGGAATGTAGGGCTGACTACAAGAGACGATACCTTGTACTTCACGAACGGTTGGCAACAATTTGTGAAAGACCACTCTTTGAAAGAGAATGATGTCCTTGTCTTTAAGTACAAGGGTGAATCACACTTTGAGGTTTTAATCTTTGGTGGAGAAAGTTTATGTGAGAAAGCAGCTTCTTATTTTGTCAGAAAATGTGGACATGCTCAAACTGAACAAGGGGGTAGCAAGGCAAAGGACACAAACACTGCTACTGAAGAAGTCATTAATACTGCTTCTAACGGTGGTGTTGAATGTGGTTCACCTGTGAAATTTCAGCGTCTGAATAGTATAGGAACGCCATTGGATGTACCTTTTGTAACTACCAATGAGACAACTTTTAATACTGGTGTTGAATCTGCGTCCCCAGAGCAGTTCATGGCTGATGCAGTCACTAAGACCACACCTGTAGTGATTCCCTCCCAAACAACCGGCAAAAGGACCAAGAAGCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNGAAAGCAGCTAATTCTAGTGAGAGAGCACTTGAGAAGGAACACTCAGGTTAA 591 0.3892 MWNVGLTTRDDTLYFTNGWQQFVKDHSLKENDVLVFKYKGESHFEVLIFGGESLCEKAASYFVRKCGHAQTEQGGSKAKDTNTATEEVINTASNGGVECGSPVKFQRLNSIGTPLDVPFVTTNETTFNTGVESASPEQFMADAVTKTTPVVIPSQTTGKRTKKXXXXXXXXXXXXXXXXXKAANSSERALEKEHSG 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme65815g00001 196 ProSiteProfiles B3 DNA-binding domain profile. 1 52 IPR003340 GO:0003677
Trme65815g00001 196 Gene3D - 1 55 IPR015300 -
Trme65815g00001 196 Pfam B3 DNA binding domain 2 49 IPR003340 GO:0003677
Trme65815g00001 196 Coils Coil 181 193 - -
Trme65815g00001 196 PANTHER B3 DOMAIN-CONTAINING 2 129 - -
Trme65815g00001 196 CDD B3_DNA 2 49 IPR003340 GO:0003677
Trme65815g00001 196 SUPERFAMILY DNA-binding pseudobarrel domain 1 50 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme65815g00001 Trme-Chr65815 98 688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme65815g00001 2 74 REM Transcription Factor Family AT4G33280 60.811 1.02e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme65815g00001 B3 6.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme65815g00001 - - tpra:123894208 295.434