Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme65809g00001 TGTGATTTTACTCCTGGTGTTCCGGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAGTTTCAGGATGTAGAGTTTACGTGTGAGTACAAATACGATGGAGAGCGTGCTCAGATACATTACCTGGAGAATGGCTCAGTAGAGATTTACAGTAGAAATGCTGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGYAGTTTCAAGGTTATGA 234 0.4145 CDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAXVSRL 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme65809g00001 77 Pfam ATP dependent DNA ligase domain 11 75 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trme65809g00001 77 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 1 76 - -
Trme65809g00001 77 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 3 76 - -
Trme65809g00001 77 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 35 43 IPR016059 GO:0003909
Trme65809g00001 77 Gene3D DNA ligase/mRNA capping enzyme 8 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme65809g00001 Trme-Chr65809 1 539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme65809g00001 1 77 Core DNA Replication Machinery Family AT1G08130 76.623 6.64e-40 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme65809g00001 K10747 - gmx:100783155 156.762