Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme657218g00001 ATGTTTATCCCAAATGTGCGTTCTGGTAGCTATGCCGATATTGGACCACGGGGATCTATGGATGATGAGCACATTCAGATAGATGATCTAGCTTGTCACCTTGGATTTGTGTTCAAGTACCCGATACCAAGTGCGTTTTATGCGATTTTTGATGGGCATGGTGGGTCTGAAGCTGCTTCCTTTGTTAAGAGGAATGCTATGAGATTATTTTTTGAAGATGCTGATATGCTACAATCG 237 0.4219 MFIPNVRSGSYADIGPRGSMDDEHIQIDDLACHLGFVFKYPIPSAFYAIFDGHGGSEAASFVKRNAMRLFFEDADMLQS 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme657218g00001 79 ProSitePatterns PPM-type phosphatase domain signature. 46 54 IPR000222 GO:0043169
Trme657218g00001 79 Gene3D - 2 79 IPR036457 -
Trme657218g00001 79 Pfam Protein phosphatase 2C 17 65 IPR001932 -
Trme657218g00001 79 SUPERFAMILY PP2C-like 2 72 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme657218g00001 Trme-Chr657218 1 237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme657218g00001 2 74 PP2C-type Phosphatase Gene Family AT1G48040 63.014 3.85e-27 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Trme657218g00001 PP2C 0.00022 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme657218g00001 K14803 - gmx:100798957 141.354