Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme65640g00001 ATGGCAGAATCAGACAACGAGTCAGGAGGAGGTCAAACAGGTTGCAGAGAGCAAGACAGGTTTCTTCCAATAGCAAACGTGAGTAGAATCATGAAAAAAGCTTTACCAGCAAACGCAAAGATCTCAAAAGAAGCAAAAGAAACAGTTCAAGAGTGTGTATCAGAGTTTATAAGTTTCATAACAGGGGAAGCTTCTGATAAGTGTCAAAAAGAGAAGAGAAAAACAATTAATGGTGATGATCTTCTTTGGGCTATGACAACACTTGGATTTGAAGATTATGTTGAACCACTCAAGATTTATTTGAGTAAGTATAGAGAGATGGAAGGGGAAAAGAGTGCTATGATTGGAAGAAGTGATCATAGAGATCATGGAAATGTTGGTGAWGGTAGTGGTGGAGTTTATAATCATGGAGTTGGAGTTTCATCTTCTTCTATGATGATGATGATGGGACATAATATGTATGGATCTGGAAGTGGATCACCATCTTTTGGAAGGAGTACCAGATAG 507 0.3826 MAESDNESGGGQTGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLSKYREMEGEKSAMIGRSDHRDHGNVGXGSGGVYNHGVGVSSSSMMMMMGHNMYGSGSGSPSFGRSTR 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme65640g00001 168 SUPERFAMILY Histone-fold 18 122 IPR009072 GO:0046982
Trme65640g00001 168 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 118 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trme65640g00001 168 ProSitePatterns NF-YB/HAP3 subunit signature. 52 68 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trme65640g00001 168 FunFam Nuclear transcription factor Y subunit B-3 10 130 - -
Trme65640g00001 168 Gene3D Histone, subunit A 11 126 IPR009072 GO:0046982
Trme65640g00001 168 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 85 IPR003958 -
Trme65640g00001 168 PRINTS CCAAT-binding transcription factor subunit A signature 49 67 - -
Trme65640g00001 168 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Trme65640g00001 168 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme65640g00001 Trme-Chr65640 337 843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme65640g00001 1 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.298 2.77e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trme65640g00001 CBFD_NFYB_HMF 1.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme65640g00001 K08065 - gmx:100305641 222.246