Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme656338g00001 ATGGTTGGCATGGACGATGATTTCGCAGGGGAGTCAAACGGCGTATTCCTTTGCGTTTTACCGATGTTTCATGTATTCGGATTAGCGATTGTGACATACGGGCAACTAAGACGAGGGAGCACGGTGGTGTCGATGGGGAGGTTTGAGATGGAGAGATTTTTGAAGGCGATTGAGAAGCATAGAGTAACAAATTTGTGGGTGGTGCCTCCAATGGTGC 217 0.4839 MVGMDDDFAGESNGVFLCVLPMFHVFGLAIVTYGQLRRGSTVVSMGRFEMERFLKAIEKHRVTNLWVVPPMV 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme656338g00001 72 SUPERFAMILY Acetyl-CoA synthetase-like 6 71 - -
Trme656338g00001 72 Gene3D - 2 72 - -
Trme656338g00001 72 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 72 - -
Trme656338g00001 72 Pfam AMP-binding enzyme 9 71 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme656338g00001 Trme-Chr656338 1 217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme656338g00001 1 71 Monolignol Biosynthesis Gene Families AT4G05160 69.014 5.64e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme656338g00001 K01904 - gmx:100808944 113.62