Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6561g00001 CCTGTTATCCCGATCTACAATGCAAAACCTGAGCAGGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCATCAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGTAATATTGCCGGACAACAATGGTTCTCTCTATGGCGATCTCAAGCGTATTTGCGAGACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACAAAGCATGTCTTTAAGATTACTAAGCAGTACTTAGCCAATGTGTCTTTGAAGATCAACGTTAAGATGGGTGGTAGAAACACCGTTCTTGTTGATGCTGTAAGCTGCAGAATACCATTGGTTAGTGACATACCGACAATAATATTTGGAGCAGATGTTACTCACCCTGAAAATGGGGAAGACTCCAGCCCATCAATAGCAGCTGTAGTAGCGTCGCAAGATTGGCCTGAAGTTACAAAGTATGCAGGCTTAGTTTGTGCTCAACCTCAAAGACAAGAACTTATACAAGATTTGTACAAAACTTGGCACGACCCTGTTCGTGGTGTAGTTAGTGGTGGCATGATCCGAGATTTGTTGGTTTCGTTTAGAAGGGCGACAGGACAGAAGCCTCAAAGGATTATATTTTACAGGGATGGTGTAAGCGAAGGACAGTTTTACCAAGTTCTACTATACGAGTTGGATGCAATTCGGAAGGCGTGTGCTTCTTTGGAGCCAAACTATCAACCACCAGTAACTTTCATAGTTGTACAAAAACGACATCATACTCGGTTATTTGCAAACAACCACAGGGACAGAAACAGCACCGATAGGAGTGGAAATATCCTGCCTGGAACTGTTGTTGATACCAAAATCTGTCACCCGACGGAGTTTGATTTTTATCTCTGCAGTCACGCTGGCATCCAGGGTACAAGTCGTCCAGCGCATTATCATGTTCTATGGGATGAAAATAACTTCACAGCAGACGGGATTCAGTCTTTG 960 0.4281 PVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLVILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPQRQELIQDLYKTWHDPVRGVVSGGMIRDLLVSFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6561g00001 320 CDD Piwi_ago-like 1 320 IPR045246 -
Trme6561g00001 320 Gene3D - 1 101 - -
Trme6561g00001 320 Pfam Piwi domain 36 320 IPR003165 GO:0003676
Trme6561g00001 320 SUPERFAMILY Ribonuclease H-like 27 320 IPR012337 -
Trme6561g00001 320 Gene3D - 105 320 IPR036397 GO:0003676
Trme6561g00001 320 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 11 320 - -
Trme6561g00001 320 SMART Piwi_a_2 35 320 IPR003165 GO:0003676
Trme6561g00001 320 ProSiteProfiles Piwi domain profile. 35 320 IPR003165 GO:0003676
Trme6561g00001 320 FunFam protein argonaute 10-like 104 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6561g00001 Trme-Chr6561 60 1969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6561g00001 1 320 Eukaryotic Initiation Factors Gene Family AT5G43810 94.375 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6561g00001 K11593 - gmx:100819073 634.795