Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme654717g00001 GCAGAAATGGGATACCAAAGTGAGAAAGAATGGTACTTTTTCTCTCCAAGGGATCGGAAATACCCGAATGGTTCGCGGCCTAATCGGGCTGCTGGAAGTGGTTATTGGAAAGCTACCGGAGCTGATAAACCGATCGGGAAATTGAAGCCGATGGGGATTAAAAAGGCACTTGTTTTCTACGCCG 184 0.4783 AEMGYQSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKLKPMGIKKALVFYA 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme654717g00001 61 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 60 - -
Trme654717g00001 61 SUPERFAMILY NAC domain 5 60 IPR036093 GO:0003677|GO:0006355
Trme654717g00001 61 Gene3D NAC domain 1 61 IPR036093 GO:0003677|GO:0006355
Trme654717g00001 61 Pfam No apical meristem (NAM) protein 6 60 IPR003441 GO:0003677|GO:0006355
Trme654717g00001 61 ProSiteProfiles NAC domain profile. 1 61 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme654717g00001 Trme-Chr654717 74 257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme654717g00001 2 61 NAC Transcription Factor Family AT5G08790 86.667 5.93e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme654717g00001 NAM 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme654717g00001 - - rcu:8282867 119.012