Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6543g00001 ATGGACCGGGAAGACGTAACTGCAATATTAAAAGACTGTGGGCATTTTCCAGAAATTGGAATAGATATTCTCGTGCAACAAAGCCTTGTAACTGTTGATTGGAAAAACAAGATTGGAATGCATGATTTGCTACGAGACATGGGAAGAGAGATCGTCCGCAAGAAATCTATAGAGGGGGGCAAAGAGCCAAGTAGATTATGGCGTTACGAGGATGTGCTTGAGTTGTTAAAAGATAATAGTACTTTAGATGTTAAGGGATTGTCTATAAAGATGTCAAGAATGGACTCAAAAGTTTATTTGGAAACCAAAGCATTTAAGAAGATGGACAAGCTTAGATTGCTTCAACTTTCTGGCGTACAACTTGATGGAGATTACAAATATCTTTCGAAAGAACTCAAGTGGCTTAGTTGGCATGGATTCCCTTTAAAATTTATACCTGCAGACTTTTATCAAGATAATCTACTTGCTGTTGACTTGAAATATTCCTATCTGGAACAAGTGTGGAAGAAGTCTCAGGTATAA 522 0.3755 MDREDVTAILKDCGHFPEIGIDILVQQSLVTVDWKNKIGMHDLLRDMGREIVRKKSIEGGKEPSRLWRYEDVLELLKDNSTLDVKGLSIKMSRMDSKVYLETKAFKKMDKLRLLQLSGVQLDGDYKYLSKELKWLSWHGFPLKFIPADFYQDNLLAVDLKYSYLEQVWKKSQV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6543g00001 173 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 167 IPR044974 GO:0006952
Trme6543g00001 173 SUPERFAMILY "Winged helix" DNA-binding domain 8 77 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6543g00001 Trme-Chr6543 1138 1930 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6543g00001 6 168 WRKY Transcription Factor Family AT5G45050 30.108 2.16e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6543g00001 - - tpra:123891787 268.855