Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6535g00001 ATGGAATTTGACGAGCATGAGGAACAAGAAGAGGAGATGGAGATTTCAGAAACACAAACGCCGGTGCCGGCGACTTACGACTCACGGTCTAAGAACGTCGCCGGAGTTGACGGCCGGAAAGGCAACGGCAACGGGAACAGCAGTCGTTTTTCCTCGACGGTGAGGCATCGAGAATGTCAGAAGAACCATGCCGTGAGTTTCGGTGGCCATGCCGTCGATGGTTGCTGCGAGTTTATCGCTGCCGGTGAGGAAAATACACTTGAAGCTGTGATTTGTGCTGCCTGTAATTGTCACCGGAACTTCCACCGCAAAGAAATTGACGGTGAGACAGTCAGTTCATGTCAGCGGCCGCAACCACCACCTCCGCCGCAACCATACCACCACCAATTCTCACCTTACTATCACCGCGTTCCACCTTCCACTGCCGGTTACCTTCACCACCACCTTGCAACTCCGGTGGCGCACCACAGACCATTAGTTCTCCCCGCCGCGGCCTCCGGTGGTGGACTCAGCAGAGAAGAAGATGATATGTCAAACCCTAGCAGCAGTGGAGGAGGTGGCGGCGGTAACGGGGGTGGTGGTGGATCAAGGAAGAGATTCAGAACAAAATTCACTCAAGAACAGAGAGATAAGTTGCTAGCTTTTGCCGAAGAACATGGTTGGAGAATTCAGAAACAAGATGAAGCTGCTATAGAACAGTTTTGTGCTGAGAATTGTGTGAAGAGAAATGTTCTTAAAGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA 783 0.5096 MEFDEHEEQEEEMEISETQTPVPATYDSRSKNVAGVDGRKGNGNGNSSRFSSTVRHRECQKNHAVSFGGHAVDGCCEFIAAGEENTLEAVICAACNCHRNFHRKEIDGETVSSCQRPQPPPPPQPYHHQFSPYYHRVPPSTAGYLHHHLATPVAHHRPLVLPAAASGGGLSREEDDMSNPSSSGGGGGGNGGGGGSRKRFRTKFTQEQRDKLLAFAEEHGWRIQKQDEAAIEQFCAENCVKRNVLKVWMHNNKNTLGKKP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6535g00001 260 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 56 106 IPR006456 -
Trme6535g00001 260 MobiDBLite consensus disorder prediction 164 199 - -
Trme6535g00001 260 MobiDBLite consensus disorder prediction 1 15 - -
Trme6535g00001 260 MobiDBLite consensus disorder prediction 110 133 - -
Trme6535g00001 260 FunFam Zinc-finger homeodomain protein 2 189 258 - -
Trme6535g00001 260 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 31 256 - -
Trme6535g00001 260 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Trme6535g00001 260 Gene3D - 182 257 - -
Trme6535g00001 260 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Trme6535g00001 260 NCBIfam homeobox domain, ZF-HD class 197 254 IPR006455 -
Trme6535g00001 260 MobiDBLite consensus disorder prediction 1 51 - -
Trme6535g00001 260 SUPERFAMILY Homeodomain-like 182 258 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6535g00001 Trme-Chr6535 354 1136 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6535g00001 7 256 ZF-HD Transcription Factor Family AT4G24660 49.412 1.78e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trme6535g00001 ZF-HD_dimer 4.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6535g00001 - - gmx:100776421 316.235