Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme65355g00001 GCTATTGCTGAATTGGTGGGAACATACATTCTTATATTTGCTGGTTGTGGAGCTGCTCTTGTCAATGAGAGGTTACAAATCACAGTAGTTGGCATAGCAATTGTTTCAGGCTTAGCTCTAACTGTCGCTATATATTCGGTTGGTCACGTCTCTGGTGGTCATTTCAATCCTGCTGTCACAATTGCCTTAGCCGTTGTCCGAAAAATTCAATTGAAACTTGTAAGTTACATGTTCGATTTGAATACTCTTCGACACATGTATAGCACAATACGCTGCTAA 279 0.405 AIAELVGTYILIFAGCGAALVNERLQITVVGIAIVSGLALTVAIYSVGHVSGGHFNPAVTIALAVVRKIQLKLVSYMFDLNTLRHMYSTIRC 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme65355g00001 92 Gene3D Glycerol uptake facilitator protein. 1 78 IPR023271 -
Trme65355g00001 92 Pfam Major intrinsic protein 2 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme65355g00001 92 PANTHER AQUAPORIN NIP2-1 2 74 IPR034294 -
Trme65355g00001 92 SUPERFAMILY Aquaporin-like 2 76 IPR023271 -
Trme65355g00001 92 ProSitePatterns MIP family signature. 54 62 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme65355g00001 Trme-Chr65355 532 810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme65355g00001 2 75 Major Intrinsic Protein MIP AT4G18910 55.263 1.88e-20 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme65355g00001 K09874 - gmx:100798380 127.102