Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6531g00001 GTTAGAGGCTTTGACATAATCGATGAAGTAAAGGAAGCACTTGAAGCTGCTTGTCCTTCCACAGTATCATGTGCAGATATCATAGCACTTGCAACAAGAGATGCTGTGGCTTTATCAGGAGGACCTAAATACAGCGTTCCGACTGGAAGACGGGATGGATTAGTGTCCAACATAGCTGATGTCGAGTTACCAGGACCTGACATATCAATTCCAGAACTATCAAAGTTTTTTGCTGCAAAGGGAATTAAAAATGAAGAAATGGTGGCCCTGTTGGGAGCACATACGGTCGGTGTTTCTCACTGCGGATTTTTTGCTGACAGGCTAAGTGGTTTTGGTGGGAAGCCTGATCCTACAATGGATCCAGCATTGGCTACCAAGCTTATTAAGTTGTGCAAATCAAATCCTGATGCTGCTGCGTTTTTGGACCAGAACACCACTTCCGTCGTCGATAATGAATACTACAAACAACTTCTGCTGAAGAGAGGTATTATGGAGATCGATCAGCAACTAGCATTGGACATATCCACCAGTCCGTTTGTATCTGGTTTTGCTTCAGACAGTGAAAAGTTTATGCAGAGGTTTGGAATGGCTATGGTGAAGATGGGAGAAGTCGGAGTCTTAGTGGGGAAGGAAGGTGAAATTCGGAAGAACTGCCGGATGTTTAACAATGGCACTGCCTAA 681 0.4435 VRGFDIIDEVKEALEAACPSTVSCADIIALATRDAVALSGGPKYSVPTGRRDGLVSNIADVELPGPDISIPELSKFFAAKGIKNEEMVALLGAHTVGVSHCGFFADRLSGFGGKPDPTMDPALATKLIKLCKSNPDAAAFLDQNTTSVVDNEYYKQLLLKRGIMEIDQQLALDISTSPFVSGFASDSEKFMQRFGMAMVKMGEVGVLVGKEGEIRKNCRMFNNGTA 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6531g00001 226 PRINTS Plant peroxidase signature 85 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 PRINTS Plant peroxidase signature 196 209 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 PRINTS Plant peroxidase signature 2 15 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 PRINTS Plant peroxidase signature 21 31 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 PRINTS Plant peroxidase signature 156 173 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 PRINTS Plant peroxidase signature 40 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 Gene3D Peroxidase, domain 2 69 201 - -
Trme6531g00001 226 SUPERFAMILY Heme-dependent peroxidases 2 222 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 Gene3D - 1 68 - -
Trme6531g00001 226 Pfam Peroxidase 2 186 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 ProSitePatterns Peroxidases proximal heme-ligand signature. 86 96 IPR019793 -
Trme6531g00001 226 ProSiteProfiles Plant heme peroxidase family profile. 1 222 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 PANTHER - 2 222 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 CDD secretory_peroxidase 1 221 IPR033905 GO:0004601|GO:0042744
Trme6531g00001 226 PRINTS Haem peroxidase superfamily signature 22 39 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 PRINTS Haem peroxidase superfamily signature 142 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 PRINTS Haem peroxidase superfamily signature 40 52 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 PRINTS Haem peroxidase superfamily signature 86 101 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme6531g00001 226 FunFam Peroxidase 64 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6531g00001 Trme-Chr6531 2 682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6531g00001 1 223 Peroxidase AT4G26010 55.804 7.58e-86 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6531g00001 K00430 - jre:108985677 285.034