Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme65288g00001 ATGCATATGTGGGGACATGGATCACAATACAGAAAAGGCCCCGAATCTCTGCGAGGTACACAACCTACAGGTATGCTGAGGCTTCCTTGTTATTGTTGTTCACCAGGTTGCCGGAACAACATCGATCATCCAAGAGCGAAGCCATTGAAAGATTTCAGAACACTTCAAACACATTACAAAAGAAAACATGGAATTAAGCCTTTCATGTGTAGAAAATGCGGTAAGGCTTTCGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGTTTATGTGGTTCTGATTTTAAGCATAAGAGATCACTAAAGGATCATATAAGAGCTTTTGGAAGTGGTCATGCTGCTTATGGAATCAATGGTTTTGAAGAAGAGGATGAACCTGCTTCTGAAGTTGAACAAGATAATGATTCCACTCAGACTCAGTAG 444 0.4077 MHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGINGFEEEDEPASEVEQDNDSTQTQ 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme65288g00001 147 MobiDBLite consensus disorder prediction 128 147 - -
Trme65288g00001 147 Gene3D Classic Zinc Finger 46 122 - -
Trme65288g00001 147 MobiDBLite consensus disorder prediction 1 20 - -
Trme65288g00001 147 SUPERFAMILY beta-beta-alpha zinc fingers 54 88 IPR036236 -
Trme65288g00001 147 PANTHER ZINC FINGER PROTEIN WIP2 1 142 IPR043584 GO:0003700|GO:0010468
Trme65288g00001 147 FunFam Zinc finger protein WIP2 37 119 - -
Trme65288g00001 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 88 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme65288g00001 Trme-Chr65288 110 553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme65288g00001 1 147 C2H2 Transcription Factor Family AT3G57670 91.892 3.53e-101 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme65288g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme65288g00001 - - tpra:123897861 330.872