Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6521g00001 GAGGAGACAGTTGGATTTGGAAAAGGAGTTACCAAACTTTATGCAACCATTGATTTAGAGAAAGCACGAGTGGGAAGGACCAGAATCATTGAAAAGGAACATACTAATCCTAGATGGTACGAGTCTTTTCACATTTATTGTGCCCACTTGGCATCAGATATCATCTTCACTGTGAAAGATGACAATCCTATTGGGGCAACCTTAATTGGAAGAGCGTATGTGCCAGTTGAGGAGGTGTTGGGTGGTGAGGAAATAGATAGATGGCTTGAAATATTGGATGTGGATAAAAATCCAATTCATGGAAATTCAAAGATCCATGTGAAGTTGCAATTTTTCGATGTTACTAAAGACCGAAACTGGGCTCTAGGCATTAGAAGTCCTAAATTTCCTGGAGTTCCTTATGCTTATTTCACACAGAGACAAGGATGTAAGGTTTCTCTGTACCAAGATTCTCATGTCCCGGACAATTTTGTCCCCAATATACAACTTGCAGGAGGCCAGACTTACCAGCCTCATAGATGTTGGGAGGATGTTTTTGATGCAATCACAAAAGCAAGGCACTTAATATACATTACAGGATGGTCTGTTTATACTGAGATTTCCTTGGTAAGGGATTCAAGGAGGCCAAAGCCAGGAGGAGACGTAACACTCGGTGAGCTTCTCAAGAAAAAAGCACAAGAAGGCGTTAGGGTATTAATGCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTTAAAAAAAGATGGGTTGATGGCTACTCATGATCAAGAAACTGCGGAATTCTTCCAAGGCTCTGAAGTGCACTGTGTTTTATGCCCTCGCAATCCAGATGATGGTGGAAGCATTGTTCAGAATATTGAAATTGGCACCATGTTTACTCATCATCAGAAAATTTTGGTGGTGGACAGTGAGTTGCCAAATGAAGCAGGGTTGAACAAGCGAAGAATTGTGAGTTTCGTAGGAGGCATTGATCTCTGTGATGGAAGATATGATACTCAGTTTCATTCACTTTTCCGAACCCTGGATACAGCACACCATGATGATTTTCATCAGCCTAACTTTCCTGGCGCTTCAATACAAAAAGGTGGTCCTAGGGAACCATGGCATGATATCCACTCAAGGCTTGAAGGTCCCATTGCTTGGGATGTTTTGTTTAACTTTGAACAGAGATGGAGGAAGCAAGGTGGAAAGGACTTGCTTGTTCCTCTAAGAGAGCTTGAAGATGTCGTTATTACACCATCCCCAGTAACATTCCCTGATGATCAAGAGACGTGGAACGTTCAGTTATTTAGATCTATTGACGGTGGAGCAGCTTTTGGGTTCCCAGAAACTCCTGAAGATGCTACTAAAGCTGGGCTTGTTAGTGGGAAGGATAACATAATAGATCGCAGTATTCAAGATGCTTATATCAATGCTATTCGACGTGCAAAGAATTTCATCTATATTGAAAATCAATATTTCCTTGGAAGTTGTTATGCTTGGAGTGCGGATGGTATTAAGCCTGAAGACATTGGTGCCTTGCATCTGATCCCAAAGGAGCTTTCACTTAAGATTGTTAGCAAGATTGAAGCTGGGGAAAGGTTCACAGTGTATGTTGTGGTTCCCATGTGGCCTGAGGGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTAGACTGGCAGAGGAGAACAATGGATATGATGTACAAAGATGTTATTGAAGCACTCAATGCCAAGGGAATTGAGGAAGATCCTAGGAACTATTTGACATTCTTCTGCCTTGGCAACCGAGAGGTGGTAAAACAAGGAGAGTACGAGCCTTCTGAAAAACCAGAACCTGATTCAGATTACCAGCGAGCCCAAGAGGCCAGGCGTTTCATGATTTATGTTCATGCCAAGATGATGATAGGTAAGAAAAAACATTAA 1905 0.4194 EETVGFGKGVTKLYATIDLEKARVGRTRIIEKEHTNPRWYESFHIYCAHLASDIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEIDRWLEILDVDKNPIHGNSKIHVKLQFFDVTKDRNWALGIRSPKFPGVPYAYFTQRQGCKVSLYQDSHVPDNFVPNIQLAGGQTYQPHRCWEDVFDAITKARHLIYITGWSVYTEISLVRDSRRPKPGGDVTLGELLKKKAQEGVRVLMLVWDDRTSVGLLKKDGLMATHDQETAEFFQGSEVHCVLCPRNPDDGGSIVQNIEIGTMFTHHQKILVVDSELPNEAGLNKRRIVSFVGGIDLCDGRYDTQFHSLFRTLDTAHHDDFHQPNFPGASIQKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVPLRELEDVVITPSPVTFPDDQETWNVQLFRSIDGGAAFGFPETPEDATKAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCYAWSADGIKPEDIGALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQRRTMDMMYKDVIEALNAKGIEEDPRNYLTFFCLGNREVVKQGEYEPSEKPEPDSDYQRAQEARRFMIYVHAKMMIGKKKH 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6521g00001 634 CDD C2_plant_PLD 4 112 - -
Trme6521g00001 634 SUPERFAMILY Phospholipase D/nuclease 415 629 - -
Trme6521g00001 634 Gene3D C2 domain 2 121 IPR035892 -
Trme6521g00001 634 ProSiteProfiles C2 domain profile. 1 89 IPR000008 -
Trme6521g00001 634 SMART C2_3c 3 88 IPR000008 -
Trme6521g00001 634 FunFam Phospholipase D delta 165 410 - -
Trme6521g00001 634 Gene3D Endonuclease Chain A 162 407 - -
Trme6521g00001 634 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 114 IPR035892 -
Trme6521g00001 634 Gene3D Endonuclease Chain A 437 630 - -
Trme6521g00001 634 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 290 329 IPR001736 GO:0003824
Trme6521g00001 634 PANTHER PHOSPHOLIPASE D 12 629 IPR015679 -
Trme6521g00001 634 SMART pld_4 290 329 IPR001736 GO:0003824
Trme6521g00001 634 Pfam Phospholipase D Active site motif 290 329 IPR001736 GO:0003824
Trme6521g00001 634 Pfam C2 domain 9 91 IPR000008 -
Trme6521g00001 634 SUPERFAMILY Phospholipase D/nuclease 115 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6521g00001 Trme-Chr6521 1 1905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6521g00001 1 629 Phospholipase D Gene Family (Wang group) AT3G15730 80.763 0.0 1101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6521g00001 K01115 - gmx:100786410 1172.92