Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6519g00001 ATGACTAGGCTTCTGGATGTTATGGAAGAATACTTAACTTCAAAACAGTATCGGTATCTCCGGTTGGATGGGCATACATCAGGAGGTGATCGTGGTGCTCTAATTGACCTATTTAACAACCCTGATTCCCCATATTTTATCTTCTTACTCAGCATTCGAGCCGGTGGTGTTGGAGTGAATCTTCAAGCTGCTGACACAGTTGATCTGCAAGCCCAGGCAAGGGCTCATAGAATTGGTCAAAAGAAGGATGTTCTCGTTCTTCGTTTTGAAACAGTTAGTACTATTCGTTCTGAGTTACTGTTTGTTTTTGTTAGGATTGATTACTTGGGCTATATCTCTAGTCAACGTGGGACTCTCAACA 361 0.4211 MTRLLDVMEEYLTSKQYRYLRLDGHTSGGDRGALIDLFNNPDSPYFIFLLSIRAGGVGVNLQAADTVDLQAQARAHRIGQKKDVLVLRFETVSTIRSELLFVFVRIDYLGYISSQRGTLN 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6519g00001 120 SMART helicmild6 6 79 IPR001650 -
Trme6519g00001 120 PANTHER SNF2/RAD54 HELICASE FAMILY 1 100 - -
Trme6519g00001 120 CDD SF2_C_SNF 1 89 - -
Trme6519g00001 120 Gene3D - 1 101 IPR027417 -
Trme6519g00001 120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 95 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6519g00001 Trme-Chr6519 109 1568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6519g00001 2 105 RAD5 or RAD16-like Gene Family AT5G43530 36.522 4.03e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6519g00001 - - tpra:123923116 178.718