Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme651932g00001 AGAAAGAGCAGTGGCTTTTCAAGAGGGGCATCAAAGTATAGGGGTGTTGCAAGGCACCACCACAACGGTAGATGGGAAGCTAGGATCGGAAGGGTTTTCGGAAACAAGTATCTCTACCTCGGAACCTACA 130 0.4923 RKSSGFSRGASKYRGVARHHHNGRWEARIGRVFGNKYLYLGTY 43
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme651932g00001 43 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 43 - -
Trme651932g00001 43 Gene3D AP2/ERF domain 11 43 IPR036955 GO:0003700|GO:0006355
Trme651932g00001 43 ProSiteProfiles AP2/ERF domain profile. 12 43 IPR001471 GO:0003700|GO:0006355
Trme651932g00001 43 Pfam AP2 domain 11 43 IPR001471 GO:0003700|GO:0006355
Trme651932g00001 43 SUPERFAMILY DNA-binding domain 11 43 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme651932g00001 Trme-Chr651932 33 255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme651932g00001 1 43 AP2-EREBP Transcription Factor Family AT3G54320 95.349 3.62e-27 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme651932g00001 AP2 1.4e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme651932g00001 K09285 - ini:109180375 95.9005