Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme65132g00001 GATATTGATTTTGAATCTGCGGAAGCCAAAAAAAATGTCAGTGGATCATCTACAAAGAGATCTCGTGCTGCTGAGGTCCATAATCTCTCAGAAAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGATCTAATAAATCTGACAAAGCTTCTATGCTGGATGAAGCAATTGAATACTTGAAGTCACTTCAGTTACAAGTTCAG 228 0.3904 DIDFESAEAKKNVSGSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQ 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme65132g00001 76 Gene3D - 17 76 IPR036638 GO:0046983
Trme65132g00001 76 PANTHER TRANSCRIPTION FACTOR PIF3 1 76 IPR044273 GO:0003700|GO:0006355
Trme65132g00001 76 CDD bHLH_AtPIF_like 22 76 IPR047265 -
Trme65132g00001 76 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 22 71 IPR011598 GO:0046983
Trme65132g00001 76 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 76 IPR036638 GO:0046983
Trme65132g00001 76 SMART finulus 28 76 IPR011598 GO:0046983
Trme65132g00001 76 MobiDBLite consensus disorder prediction 1 32 - -
Trme65132g00001 76 FunFam Basic helix-loop-helix transcription factor 17 76 - -
Trme65132g00001 76 Coils Coil 28 48 - -
Trme65132g00001 76 Pfam Helix-loop-helix DNA-binding domain 26 72 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme65132g00001 Trme-Chr65132 77 495 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme65132g00001 13 76 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 89.062 7.46e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme65132g00001 HLH 4.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme65132g00001 - - mtr:11419484 144.05