Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme65097g00001 CTTCGGCTTGACTCAAACTTATTCACCGGTCCTCTTCCACCTCTCAACCAAACCGATTTAAAAATATTTAACATCTCCGCCAATAATTTCACCGGTCCAGTTCCTGTAACAGAAACTCTTTCCCGGTTTAAACCGGCTTTGTTTTCAGAAAACCCGGGTCTATGTGGTGAGATTATTCACAAACAATGTGCTCATCGTTCTAGATTCTTCGGTTCTTCAAACGCCACCGCGCCGTTGAGTCAGAGCGAGGAATCACAAGGAATTGTGGTGGTTCCTTCTACTTCAAAGAACAAGAAGAATCATAAGAAAACCGGTTTGATTCTCGGTTTCACCATCACTGTTGCGATTATCGCTGTTTTTACAGTTATTATAATTGCATTGATAAAAAAGCAGAACACCGGAGGAAAATCTAAGTCGCCGGGAACGGAAACGGAAAATCCACCGGCGGCGGTAATGGAAGTGAGAACTGTAGTTGAAACGGATACGAAGGTGAAGAAGATGGAGGAAGCTCACCGGAGTGGGAAGTTGGTGTTCTGCTGCGGGGAGGTGCAGGATTATACGCTGGAGCAGCTGATGAGAGCTTCGGCGGAGCTTTTGGGAAGAGGGAGTGTGGGGACCACTTATAAGGCGGTGATGGATTCGCAGTTGATATTGACTGTCAAGAGGTTGGACGCCGGAAAAACTGGTGTGACGAGTGGAGAGGTTTTTCAGAAGCATATGGAGATTGTTGGTAGACTTCGTCACCCTAATTTGGTTACTTTGAAGGCTTTTTTTCAAGCTAAAGGAGAGAGGCTTGTTATCTATGATTATCAACCTAATGGAAGTCTCTTCAATCTAATTCATGGTATGGAT 852 0.4484 LRLDSNLFTGPLPPLNQTDLKIFNISANNFTGPVPVTETLSRFKPALFSENPGLCGEIIHKQCAHRSRFFGSSNATAPLSQSEESQGIVVVPSTSKNKKNHKKTGLILGFTITVAIIAVFTVIIIALIKKQNTGGKSKSPGTETENPPAAVMEVRTVVETDTKVKKMEEAHRSGKLVFCCGEVQDYTLEQLMRASAELLGRGSVGTTYKAVMDSQLILTVKRLDAGKTGVTSGEVFQKHMEIVGRLRHPNLVTLKAFFQAKGERLVIYDYQPNGSLFNLIHGMD 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme65097g00001 284 Pfam Protein kinase domain 196 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme65097g00001 284 Gene3D Phosphorylase Kinase; domain 1 157 270 - -
Trme65097g00001 284 Gene3D Ribonuclease Inhibitor 1 69 IPR032675 -
Trme65097g00001 284 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 282 IPR046959 -
Trme65097g00001 284 SUPERFAMILY Protein kinase-like (PK-like) 197 282 IPR011009 -
Trme65097g00001 284 ProSiteProfiles Protein kinase domain profile. 193 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme65097g00001 Trme-Chr65097 1 852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme65097g00001 1 282 Receptor kinase-like Gene Family AT5G43020 47.811 4.66e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme65097g00001 Pkinase 8.1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme65097g00001 - - gmx:100786526 349.747