Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme65060g00001 AAACAGAAAATAGATAATGCACCATTTGCTGCTAAGTCGTTTTCGGAACTTGGTATTCCGGGAGTGTTGATTGAGAGGCTAAAAAAAGAGGGTTTCAATGTTCCGACTGATGTTCAGTCTGCTGCTGTTCCTACTATTTTGAAGAACCATGATGTTATAATTCAGTCGTATACTGGTTCGGGGAAAACATTGGCTTATCTCCTTCCTATATTGTCTGTTATTGGGCCGTTGAGAGGCGAAAATCGTGAAGGTGATGTTGATGGTGGTGAGGCTGGGAAGAAATTGGGAGTTGAAGCAGTGATTGTTGCTCCTTCTAGAGAGCTTGGAATGCAGATTGTGAGAGAGTTTGAGAAGATATTGGGAGTGGATAACAAGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACCGAACTAGGCAGGAAGAAGCTCTCAAGAAAAACAAACCTGCCATTGTTGTTGGTACGCCTGGTAGGATAGCTGAGCTCAGTGCAAGTGGGAAGCTTCGCACACACGGCTGTCAATATTTGGTATTAGATGAAGTTGATGAGCTGCTGTCATTCAATTTTCGTGAAGACATGCACAGGTTATTGGAGCATGTTGGGAGGAGATCAGGTGGAGACCTAAAATCAAATGCTAAAAAGGCCGAGCGTCAGTTAATTATGGTTTCTGCAACTGTGCCGTTTTCGGTTGTTAGGGCAGCTAAAAGTTGGGGTAGCGATCCGCTTCTTGTTCAAGCTAAGAAAATTGTACCACTTGAAACTTTGTCTCCTGAGCCGGTCAATTTGTCACCGAACTCGAGTGCTAACTCCTCTAAGCCATCTAAGGCTGTGGTAGAGAGTCTACCTCCAGC 851 0.4477 KQKIDNAPFAAKSFSELGIPGVLIERLKKEGFNVPTDVQSAAVPTILKNHDVIIQSYTGSGKTLAYLLPILSVIGPLRGENREGDVDGGEAGKKLGVEAVIVAPSRELGMQIVREFEKILGVDNKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCQYLVLDEVDELLSFNFREDMHRLLEHVGRRSGGDLKSNAKKAERQLIMVSATVPFSVVRAAKSWGSDPLLVQAKKIVPLETLSPEPVNLSPNSSANSSKPSKAVVESLPPA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme65060g00001 284 MobiDBLite consensus disorder prediction 255 284 - -
Trme65060g00001 284 CDD DEADc 23 245 - -
Trme65060g00001 284 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 5 283 - -
Trme65060g00001 284 SMART ultradead3 31 263 IPR014001 -
Trme65060g00001 284 Gene3D - 1 246 IPR027417 -
Trme65060g00001 284 Pfam DEAD/DEAH box helicase 36 230 IPR011545 GO:0003676|GO:0005524
Trme65060g00001 284 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 12 40 IPR014014 GO:0003724
Trme65060g00001 284 MobiDBLite consensus disorder prediction 258 276 - -
Trme65060g00001 284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 245 IPR027417 -
Trme65060g00001 284 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 43 244 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme65060g00001 Trme-Chr65060 3 853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme65060g00001 14 242 Eukaryotic Initiation Factors Gene Family AT5G11200 27.391 8.29e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme65060g00001 - - gmx:100812968 456.832