Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6504g00001 CAGATGGTAAAGCATCTGGGGTCAACAATGTTCTGCTATAGCCAGATGGTACAACATCGTGTACATCATCTGTCTGTGCCAAAGATGTACGATGTGTTCTTGAGTTTCAGTGGGAAAGATAGTCGTGCAAAGTTCATGTCACATCTCTATTCCTCTCTTCAAAATCCAGGCGTTTATGCTTTCAGAGACGATGATGAGATTCAACGAGGAGATAAGATATCAATCTCACTGTTGCAAGCAATCGGAAAGTCTAGAATTTCTATCGTAGTTTTGTCTACAAATTATGCTAATTCAAGATGGTGTATGCTAGAGTTGGAGAAGATCATGGAAATTGGCAGAATCCAGGGTCTGGTGGTTGTGCCAGTATTCTATGAGGTGGATCCCTCAGATGTATGTCATCAGGAAGGTCAGTTTGGGAAAGCTTTTGAACATCTTATATCAAAAATTTCAGTGGATGAATACAGAAAGAGTAATTGGAGAAGAGAACTCCTTGATATTGGTGGTACCGCAGGGTTTGTCCTCATCAATTCCAGGAATGAAAGTGCAGATATCAAGAATATTATTGAACATGTCACCCGTTTGCTAGATAGGACAGAGTTATTTGTTGCTGAACATCCGGTGGGTGTAGAATCTCGTGCGGAAGCTGCGATTAAGCAGCTGAACATTCAAAAATCAGAAGCTGTTTTAATTCTAGGAATATGGGGAATGGGAGGTGTGGGCAAAACAACCATTGCCAAAGCCATATATAATCAAATTGGGAACAAACTTGAGGGAAGGAGCTTCATTCTGAATATAAGGGAATTTTGGGAGAAAGATATTAATCTAGTTTCTCTACAGCAACAGGTACTTTGTGATGTTTACAAAACTACGACCTTCAGGATACGTGACACAGAATCAGGGAAAAATATATTGAAGGAAAGACTTGCCCATAAAAGGGTACTTGTTGTGTTTGATGATGTGAATAAACTAGACCAAGTAAAGGCTTTGTGTGGAAGCCGTGAATGGTTTGGTCCTGGAAGTAGAATAATAATCACAACAAGAGATATAGATCTTCTTAGATTTTGTGGAGTTGAATCAGTGTATACAGCAGAAGAAATGGACGAAAGTGAATCTCTTGAGCTTTTCAGCCGGCATGCATTCAAGCAACCAAGTCCGGAAGAGGATTATGCTACACATTCTGCAGATGTTATTGCTTATTCGGGGAAATTACCACTAGCACTTGAAGTCCTTGGGTCCTATTTGTCTAATTGTGAAATAACAGAGTGGCAGAAA 1272 0.3994 QMVKHLGSTMFCYSQMVQHRVHHLSVPKMYDVFLSFSGKDSRAKFMSHLYSSLQNPGVYAFRDDDEIQRGDKISISLLQAIGKSRISIVVLSTNYANSRWCMLELEKIMEIGRIQGLVVVPVFYEVDPSDVCHQEGQFGKAFEHLISKISVDEYRKSNWRRELLDIGGTAGFVLINSRNESADIKNIIEHVTRLLDRTELFVAEHPVGVESRAEAAIKQLNIQKSEAVLILGIWGMGGVGKTTIAKAIYNQIGNKLEGRSFILNIREFWEKDINLVSLQQQVLCDVYKTTTFRIRDTESGKNILKERLAHKRVLVVFDDVNKLDQVKALCGSREWFGPGSRIIITTRDIDLLRFCGVESVYTAEEMDESESLELFSRHAFKQPSPEEDYATHSADVIAYSGKLPLALEVLGSYLSNCEITEWQK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6504g00001 424 Gene3D - 193 359 IPR027417 -
Trme6504g00001 424 Gene3D - 365 424 IPR042197 -
Trme6504g00001 424 Gene3D - 27 192 IPR035897 -
Trme6504g00001 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 423 IPR027417 -
Trme6504g00001 424 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 423 IPR044974 GO:0006952
Trme6504g00001 424 Pfam NB-ARC domain 211 421 IPR002182 GO:0043531
Trme6504g00001 424 ProSiteProfiles TIR domain profile. 28 195 IPR000157 GO:0007165
Trme6504g00001 424 FunFam Disease resistance protein (TIR-NBS-LRR class) 26 197 - -
Trme6504g00001 424 SUPERFAMILY Toll/Interleukin receptor TIR domain 25 171 IPR035897 -
Trme6504g00001 424 Pfam TIR domain 30 191 IPR000157 GO:0007165
Trme6504g00001 424 SMART till_3 29 169 IPR000157 GO:0007165
Trme6504g00001 424 PRINTS Disease resistance protein signature 230 245 - -
Trme6504g00001 424 PRINTS Disease resistance protein signature 307 321 - -
Trme6504g00001 424 PRINTS Disease resistance protein signature 400 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6504g00001 Trme-Chr6504 88 1975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6504g00001 24 412 WRKY Transcription Factor Family AT4G12020 29.873 3.56e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6504g00001 - - mtr:11411578 647.121