Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme64886g00001 ATGACTGAGAAGGAAAACCCTAATTCTCACTCGGCTCTGCTCCATGGAAAATACGAGCTGGGTCGAGTTCTCGGTCATGGAACATTCGCGAAGGTCTATCATGCAAAGAATCTCAACACTGGTAAAAACGTAGCCATGAAAGTCGTTGGAAAAGAAAAAGTTATCAAAGTTGGAATGATGGAACAGATCAAAAGAGAGATCTCCGTCATGAAGATGGTGAAACATCCTAACATCGTTCAAATCCATGAAGTCATGGCTTCAAAATCAAAGATCTACATCGCCATGGAACTCGTTCGCGGTGGAGAGCTTTTCAACAAGATCGTCAAAGGTCGTCTTAAAGAAGATGTTGCTAGAGTCTATTTCCAGCAATTAATCTCAGCCGTTGATTTCTGTCACAGTCGCGGTGTTTACCACCGTGATCTCAAGCCGGAGAATCTTCTTCTCGATGAAGACGGTAATCTTAAGGTGTCTGATTTTGGTCTCAGCACTTTCGGTGAACGTATGAGACAAGATGGATTGTTGCATACGACGTGTGGTACTCCGGCGTATGTTTCGCCGGAGGTAATTGCGAAGAAAGGCTACGACGGTGCTATGGCGGATATTTGGTCTTGTGGTGTAATTCTCTACGTTCTTCTCGCCGGATTTTTACCTTTTCAGGATGATAATGTGGTTAATATGTATAAGAAAATTTACAGAGGCGATTTCAAATGTCCACCGTGGTTTTCTTTGGAAGCTAAGAGGCTTATCACGAAGCTTCTAGATCCTAATCCGAATACAAGAATTACTATATCAAAGATAATGGATTCTTCTTGGTTTAAGAAGCCTGTTCCGAAGAGC 837 0.4253 MTEKENPNSHSALLHGKYELGRVLGHGTFAKVYHAKNLNTGKNVAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVQIHEVMASKSKIYIAMELVRGGELFNKIVKGRLKEDVARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEDGNLKVSDFGLSTFGERMRQDGLLHTTCGTPAYVSPEVIAKKGYDGAMADIWSCGVILYVLLAGFLPFQDDNVVNMYKKIYRGDFKCPPWFSLEAKRLITKLLDPNPNTRITISKIMDSSWFKKPVPKS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme64886g00001 279 CDD STKc_SnRK3 17 271 - -
Trme64886g00001 279 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Trme64886g00001 279 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme64886g00001 279 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Trme64886g00001 279 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme64886g00001 279 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme64886g00001 279 Gene3D Transferase(Phosphotransferase) domain 1 9 279 - -
Trme64886g00001 279 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Trme64886g00001 279 FunFam Non-specific serine/threonine protein kinase 8 278 - -
Trme64886g00001 279 PIRSF ILK 1 269 - -
Trme64886g00001 279 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 274 - -
Trme64886g00001 279 SUPERFAMILY Protein kinase-like (PK-like) 15 274 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme64886g00001 Trme-Chr64886 18 854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme64886g00001 9 279 CBL-interacting serine-threonine protein kinases AT4G30960 82.288 1.03e-165 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trme64886g00001 Pkinase 3.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme64886g00001 - K07198 gmx:100781111 501.516