Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme64877g00001 GGTAACGGCACCGATCTACGACCACTCCCACCGAATATGTCAGAGTTATTACTCGGTTCCGGATTCGATCGGTTGTTAGAGCAATTCTCTCAGATCGAAATCAACGGTTTCGGTAGAGCAGAGAATCCACCGGCGTCAAAGGCGGCGATAGAATCAATACCAACGGTTGAGATCGCCGAAGCAGAAATAGAAGCCGAAACGCACTGTGCGGTTTGTACAGAAGCGTTTCACCTTGGTTCGGAAGCGCGTAAGATGCCTTGTAAGCATCTTTATCATTCCGATTGCATTCTCCCATGGCTTTCGATGCGAAATTCGTGTCCGGTATGCCGTCACGAGCTACCGTCCGATCAAAATCCTCCGGAGAGTGTAATATCCGGTCAGATCAACGAAGAATCAGTTGGATTGACGATATGGAGGTTACCGGGAGGTGGATTTGCGGTTGGGAGATTCGCCGGTGGTCGGAGAGCCGGCGAGATTCAGTTACCGGTAGTTTACACGGAGATGGATGGCGGTAATACTAATGACTCAAACGAAGATGCTAGAAGATTCTCTTTTGCAGTTGGAAACGATAGAGTTAGAGAAAGACGTGGAATTCGAAGAATTTTTCGAAATTTCTTTTCCTTTTTTGGTAACGTTAATTTAAATCGTAGCTTTTCTGGTTCATTGTTTAGTAGAAGCTCACGTAGTAGAAGAACCAGAACTACTTGGGTTGCAGAAGAATGA 723 0.462 GNGTDLRPLPPNMSELLLGSGFDRLLEQFSQIEINGFGRAENPPASKAAIESIPTVEIAEAEIEAETHCAVCTEAFHLGSEARKMPCKHLYHSDCILPWLSMRNSCPVCRHELPSDQNPPESVISGQINEESVGLTIWRLPGGGFAVGRFAGGRRAGEIQLPVVYTEMDGGNTNDSNEDARRFSFAVGNDRVRERRGIRRIFRNFFSFFGNVNLNRSFSGSLFSRSSRSRRTRTTWVAEE 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme64877g00001 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 35 114 - -
Trme64877g00001 240 SUPERFAMILY RING/U-box 49 116 - -
Trme64877g00001 240 Pfam Protein of unknown function (DUF1117) 133 231 IPR010543 -
Trme64877g00001 240 SMART ring_2 69 109 IPR001841 -
Trme64877g00001 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 116 IPR013083 -
Trme64877g00001 240 FunFam E3 ubiquitin-protein ligase RING1-like 31 116 - -
Trme64877g00001 240 ProSiteProfiles Zinc finger RING-type profile. 69 110 IPR001841 -
Trme64877g00001 240 CDD RING-H2_RNF126-like 69 110 - -
Trme64877g00001 240 Pfam Ring finger domain 68 110 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme64877g00001 Trme-Chr64877 1 723 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme64877g00001 5 121 C3H Transcription Factor Family AT5G01980 44.444 2.16e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme64877g00001 K11982 - gmx:100804867 275.789