Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6486g00001 GTTGCTGGGGGTGCAGCATCCGGCAAAAAAACAGTTTGTGATATGATTGTTCAACAGCTTCATGACCAACGAGTTGTGCTTGTTAATCAGGATTCTTTTTACAATAACTTGACTGAGGAAGAACGAGCAAGAGTACAAGATTACAACTTTGACCATCCTGATGCTTTTGATACCGAGGAATTGCTTCGTGTTATGGATAAGTTGAAGCATGGTGAAGCTGTAGATCTTCCAAAGTATGATTTTAAGAGTTACAAAAGTGATGCGTTAAGAAGGGTGAACCCTTCAGATGTTATAATTTTGGAAGGCATTCTTGTTTTCCACGATCCACGTGTTCGCGAGTTGATGAACATGAAGATATTTGTTGACACAG 370 0.3973 VAGGAASGKKTVCDMIVQQLHDQRVVLVNQDSFYNNLTEEERARVQDYNFDHPDAFDTEELLRVMDKLKHGEAVDLPKYDFKSYKSDALRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDT 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6486g00001 123 Gene3D - 1 123 IPR027417 -
Trme6486g00001 123 Pfam Phosphoribulokinase / Uridine kinase family 1 123 IPR006083 GO:0005524|GO:0016301
Trme6486g00001 123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 123 IPR027417 -
Trme6486g00001 123 PANTHER URIDINE KINASE 1 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6486g00001 Trme-Chr6486 339 1531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6486g00001 1 123 PRT Gene Family AT4G26510 79.675 3.06e-69 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6486g00001 K00876 - gmx:100527893 234.187