Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme64845g00001 ATGCCGTTGCAGAGATCAGGAAAGGACTTCACTATAATGAAGGTGCTGCCATCTGGTGTTTATCAGTTTAGATTTATCGTGGATGGACGATGGAGGTACGCACCTGACTTGCCTTGGGCTAAAGATGATGCTGCCAATACTTACAACATTCTGGACTTACAGCTTTGTTCTGTGGTGAAGTAG 183 0.4481 MPLQRSGKDFTIMKVLPSGVYQFRFIVDGRWRYAPDLPWAKDDAANTYNILDLQLCSVVK 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme64845g00001 60 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 2 55 IPR043554 -
Trme64845g00001 60 SUPERFAMILY E set domains 5 52 IPR014756 -
Trme64845g00001 60 CDD E_set_AMPKbeta_like_N 1 52 - -
Trme64845g00001 60 Pfam Glycogen recognition site of AMP-activated protein kinase 1 54 IPR032640 -
Trme64845g00001 60 Gene3D Immunoglobulins 1 56 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme64845g00001 Trme-Chr64845 175 518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme64845g00001 4 51 Protein tyrosine phosphatase (PTP) family AT3G01510 33.333 7.20e-06 39.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme64845g00001 K07199 - gmx:100811585 109.383