Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme64699g00001 ATGGATTACAACAGAGACGGCAACGTCGTTCAAATCATCACCTCCGGCGGCGGAGGAGGTGGTGCTGATAGCTGGTCAACCGACCAAGCCGATTGGGCGACGGAAGACGAATATCGATACTGGAACGGAAATGAACCCGGCGAAACCACGCCATCTTCAAACTCAAATTCCGAGATACAACAGCGGTCAGGAAGCGAGCCGCCGAGTAAGAAATCAAGAAGCAATTCACAAGACGGCGGATCGAATCGAGCAAAGGCAATCGGGAAAATGTTCTTTAAGACGAAACTGTGTTGCAAGTTTCGTGTGGGAACTTGTCCTTATATAACAAACTGTAATTTTGCTCACAGTGTTGAGGAGCTTCGGCGGCCGCCGGCAAATTGGCAGGAGATTGTGGCTGCTCATGAGGAAGAGAGAAATGTGCTTGAGCAGCCGAGGGAAGAGTTTCAGATTCCGACTGTTGGTTCGAGTACTTTTGTAGGGGAGAGTATGAATAATAGGTCTTATAAGGGTAGACATTGTAAGAAATTTTATACTGAAGAAGGTTGTCCTTATGGTGATAGTTGCACTTTTCTTCATGATGAACAATCTAAGAATCGCGAAAGTGTTGCTATAAGTTTAGGTCCTGGTGGTTATGGTGGTGGTGGTGGTGGTGGT 654 0.4694 MDYNRDGNVVQIITSGGGGGGADSWSTDQADWATEDEYRYWNGNEPGETTPSSNSNSEIQQRSGSEPPSKKSRSNSQDGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNFAHSVEELRRPPANWQEIVAAHEEERNVLEQPREEFQIPTVGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGG 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme64699g00001 218 FunFam Zinc finger, CCCH-type 160 199 - -
Trme64699g00001 218 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Trme64699g00001 218 FunFam Zinc finger CCCH domain-containing protein 87 122 - -
Trme64699g00001 218 ProSiteProfiles Zinc finger C3H1-type profile. 91 118 IPR000571 GO:0046872
Trme64699g00001 218 PANTHER CCCH ZINC FINGER/TIS11-RELATED 52 197 IPR045877 GO:0003729
Trme64699g00001 218 Pfam CCCH-type zinc finger 171 193 IPR041367 -
Trme64699g00001 218 MobiDBLite consensus disorder prediction 45 82 - -
Trme64699g00001 218 Gene3D - 87 122 - -
Trme64699g00001 218 Gene3D - 159 206 - -
Trme64699g00001 218 SUPERFAMILY CCCH zinc finger 89 122 IPR036855 GO:0046872
Trme64699g00001 218 SUPERFAMILY CCCH zinc finger 164 195 IPR036855 GO:0046872
Trme64699g00001 218 MobiDBLite consensus disorder prediction 1 82 - -
Trme64699g00001 218 ProSiteProfiles Zinc finger C3H1-type profile. 167 195 IPR000571 GO:0046872
Trme64699g00001 218 SMART c3hfinal6 167 194 IPR000571 GO:0046872
Trme64699g00001 218 SMART c3hfinal6 91 117 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme64699g00001 93 197 C3H Transcription Factor Family AT1G68200 30.556 6.42e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme64699g00001 zf-CCCH 1.3e-05 CL0537