Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6461g00001 ATGCCACAGGCTTTGCGGACGAATGACGCAGCTGGTAAGTTCCAACAAATAACTGAAAAATTTGAAGCTGCATTGAGTGATATTTCATACAACAAACTTGAGATATCACTATCAGAGGAAGTTCAAGAACAGATTGAACTGGTTCATGCTCAGTTCAAAAGAGCCAAATCTCGAACAGAATTTTCTGAGAAGTTGCATCTGAGGACTATAAATGATCTAAAGAAAGAATCCAGTGAATTACACGAATTGGTCATAACAAGGTATGGAGAACCAGGTGACAGATTTGAAGCAGTCTCCCTTCTTACAAAACTGAAGGATTGCGTGCTCACAGAAAATCCCGAGGTTGCTTCCTATGAGAGTGAGCAAGTGTCAATTAAGCACCGGTCTCCTGTAATTCCAGATGACTTTCGATGTCCTATATCTCTCGAACTAATGAAAGATCCTGTAATTGTCTCTACCGGTCAG 465 0.4065 MPQALRTNDAAGKFQQITEKFEAALSDISYNKLEISLSEEVQEQIELVHAQFKRAKSRTEFSEKLHLRTINDLKKESSELHELVITRYGEPGDRFEAVSLLTKLKDCVLTENPEVASYESEQVSIKHRSPVIPDDFRCPISLELMKDPVIVSTGQ 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6461g00001 155 Pfam U-box domain 132 154 IPR003613 GO:0004842|GO:0016567
Trme6461g00001 155 SUPERFAMILY RING/U-box 129 155 - -
Trme6461g00001 155 ProSiteProfiles U-box domain profile. 131 155 IPR003613 GO:0004842|GO:0016567
Trme6461g00001 155 PANTHER U BOX DOMAIN-CONTAINING 9 155 - -
Trme6461g00001 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6461g00001 Trme-Chr6461 96 724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6461g00001 13 155 U-box Gene Family AT3G54850 46.471 3.41e-37 132