Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme64611g00001 ATGGTTAGAAAGCGATCTCGTCGATCAAATGCAGCAAATAACTCAGTGTTCCTCCCCACGGAACTCATCATCGAAATCCTATCTCGGCTTAGTGTAAAAGACATCGTGCGATTCAAATGTGTGAGCAAGTCATGGGAAACAATCACATCCGATTCAAACTTTGTCGATAAATATCTTAAGATGCAAATATTCATAAAGAGTAGCCGGGGAAAGTTTACCATGTCGGTTAACTGTTTAGACACGATAATCGATGTGAAGAGGAAAGTTTTTGAGGAGAAAGGAATACCGGTGCACCAGCAAATGTTGATGTTCAAAAGCAAGCATCTAAATGACAACATGACTCTTGCCAGTTACAATATCCAAGAGAATTCAACCCTCAACCAGAAATTACCCCGCAACCGGAACACCCTCCACCTTAGGCACCGCATGGTGGGGGACTAG 441 0.4286 MVRKRSRRSNAANNSVFLPTELIIEILSRLSVKDIVRFKCVSKSWETITSDSNFVDKYLKMQIFIKSSRGKFTMSVNCLDTIIDVKRKVFEEKGIPVHQQMLMFKSKHLNDNMTLASYNIQENSTLNQKLPRNRNTLHLRHRMVGD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme64611g00001 146 ProSiteProfiles F-box domain profile. 12 58 IPR001810 GO:0005515
Trme64611g00001 146 CDD F-box_AtFBW1-like 17 54 - -
Trme64611g00001 146 SMART ubq_7 61 131 IPR000626 GO:0005515
Trme64611g00001 146 Gene3D - 56 128 - -
Trme64611g00001 146 Pfam F-box domain 18 54 IPR001810 GO:0005515
Trme64611g00001 146 PRINTS Ubiquitin signature 91 111 IPR019956 -
Trme64611g00001 146 PRINTS Ubiquitin signature 70 90 IPR019956 -
Trme64611g00001 146 PRINTS Ubiquitin signature 112 133 IPR019956 -
Trme64611g00001 146 Gene3D - 17 54 - -
Trme64611g00001 146 Pfam Ubiquitin family 63 127 IPR000626 GO:0005515
Trme64611g00001 146 SMART fbox_2 18 58 IPR001810 GO:0005515
Trme64611g00001 146 PANTHER UBIQUITIN 61 129 - -
Trme64611g00001 146 SUPERFAMILY F-box domain 18 66 IPR036047 GO:0005515
Trme64611g00001 146 SUPERFAMILY Ubiquitin-like 59 127 IPR029071 -
Trme64611g00001 146 ProSiteProfiles Ubiquitin domain profile. 61 126 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme64611g00001 Trme-Chr64611 97 653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme64611g00001 61 127 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 51.471 1.13e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme64611g00001 - K02927 pavi:110774095 74.3294