Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme644g00001 ATGCCTTCACCACTTCTGATGCTTTCTTTTTCTTTGGTCTTCCTCTCAACCTTCTTCCAAACAAATTCCATTTCTGCTACTGAAATACACACATTGTGTGCACCATTTAGCTGCGGCAAGTTTACCGAAATCAGATATCCATTCTGGAGTTTGCAAAAACAAGAAAACTATTGCGGCCTTCCAGAGTTCAAGCTTGATTGCCAAAATGGCAGCTTGACTTTGGACATCAAGTCCCAAAAGTTTCACATCCTTGATTTAAACCAATCATCTAAAGTTTTGAGAATTGCTAGGGAAGATATCCTATATGGTGCTACTACTACTACTTCATGTCCCTTCCAATATACCGATGTAGATATAAGTCAGACCTTCTTCCAATACACTTCCAATGATGCCAATTATACTCTACTTTTTGAGTGTGGTCCTTTTCCTAAACCAAGCTCTTCTACACCGATTTTAGACTACATTGAACAAATAAATTGTCACTACAAAGAGGGTGAAGATAAATTTGCATACTTAGCTTTAAGTAGTAAAATTGTGGATTGGGATGTTCTCAAGTGTAAGAAAAACGTCTATGTTCCTGGCCTAAATACTTCATCCACAACCATGTTTCAAACACTAGAGAATGGATTTGAAGTACAGTGGAGTGTTTCTGGAGAAGAAATCTGCCATGGTTGTGTGAAATCTGGTGAGGGATGCGGATATGATACAACAAAAAATGAAGTTATATGCATCTCTCCGAAGAAATCTGAGGCTTCAAACTGGAAGAGGAAAGTCATTCTTGGTATTGTTTCTATTGTGTTGGCAACTCTTGCTGTGAGCACAGCAATATACTTCTATCGACGCCAAAATAATGGCGGTTCTACAGACTCATATGTACAGTCTATCAGCCTCACTTCTCAACCATCTCATTCTGAACAGGGAAGTCGGCGCATTAATAAAAGTCAAAATTTTGGCGTTCAGCATTTTACTTTTAGTGATCTCGAACAGGCCACAAACAAATTTGACCGAGAAAATCAACTAGGAGATGGGGGTTGTGCGGCAGTGTTTTACGGTAAACTGGATACGGATGGGCGTCATGTTGCTGTGAAGAGGTATTTCGAGTACAACGGCGAAAGAGATGAGCAGTATGTGTCTGAAGTAAAGATCCTGGCTGGTCTTAAACACCCAAATCTTGTGTCTCTTTATGGATGCACTTCACGAGAAAGCCGCGAACCTCTGCTTGTCTACGAGTATGTTTGTAATGGAACTTTGGCTGAGCATCTTGATGGTAGCAAAGAAACACTTGATTGGAATACCAGGATGAGGATTGCTGTGGAGACAGCATGTGCATTGCAGTATCTTCATGCATCTAATGTCATCCATAGAGACATAAAAAGCACTAATATTCTTCTCGATGCTGAACGTCATGTCAAGCTAGCTGATTTTGGACAATCGTGTGCTCTTACAGATAATAATGGTAGTCCTGGTTCAACACCTCTACGAGGGACTCCGGGTTATATTGATCCCGAGTTCAAACAGTTTCATAAGCTTACTTTCGCAAGTGACGTTTTCAGCTACGGAGTAGTTATGCTAGAGTTGCTAACATCTTTGCCTCCTTATGCTATATGGAAAAAGTCTGAGGAGCTGCTGTATACATGGGCTTTGGATAGATACCAAAATAACGCTTTGCATGAAATTGTGGATTCTACCCTTGGTTTTCATTCAGATGCCAATTTACATCAAAAGATCAATAGTTTTGCTGACATTGCATTTTCGTGTCTCCAAAGTAAAAGCAGTGATAGACCTAGCATGGCTGAAGTGCTGGAACGATTAATGGAAATTGAGAGTGATCCGCCTGAGAATGAAAGGCAAGATGATGCAGTTCAGAGTGATCCTCCTGAGAATGAAAGGCAAGATGATGCAATTCAGAGTGATCCTCCTGAGAATGAAAGGCAAGATGATGCAGTTCCGTTGTTGAATAATGATCCATCAACAAGTTCAATGGCAATGGATACTTCTAAGAGATATTATGTTACAGCACCATGTTGA 2028 0.4034 MPSPLLMLSFSLVFLSTFFQTNSISATEIHTLCAPFSCGKFTEIRYPFWSLQKQENYCGLPEFKLDCQNGSLTLDIKSQKFHILDLNQSSKVLRIAREDILYGATTTTSCPFQYTDVDISQTFFQYTSNDANYTLLFECGPFPKPSSSTPILDYIEQINCHYKEGEDKFAYLALSSKIVDWDVLKCKKNVYVPGLNTSSTTMFQTLENGFEVQWSVSGEEICHGCVKSGEGCGYDTTKNEVICISPKKSEASNWKRKVILGIVSIVLATLAVSTAIYFYRRQNNGGSTDSYVQSISLTSQPSHSEQGSRRINKSQNFGVQHFTFSDLEQATNKFDRENQLGDGGCAAVFYGKLDTDGRHVAVKRYFEYNGERDEQYVSEVKILAGLKHPNLVSLYGCTSRESREPLLVYEYVCNGTLAEHLDGSKETLDWNTRMRIAVETACALQYLHASNVIHRDIKSTNILLDAERHVKLADFGQSCALTDNNGSPGSTPLRGTPGYIDPEFKQFHKLTFASDVFSYGVVMLELLTSLPPYAIWKKSEELLYTWALDRYQNNALHEIVDSTLGFHSDANLHQKINSFADIAFSCLQSKSSDRPSMAEVLERLMEIESDPPENERQDDAVQSDPPENERQDDAIQSDPPENERQDDAVPLLNNDPSTSSMAMDTSKRYYVTAPC 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme644g00001 675 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 655 IPR044652 GO:0004672
Trme644g00001 675 Pfam Wall-associated receptor kinase galacturonan-binding 33 97 IPR025287 GO:0030247
Trme644g00001 675 Pfam Wall-associated receptor kinase C-terminal 179 246 IPR032872 -
Trme644g00001 675 ProSiteProfiles Protein kinase domain profile. 334 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme644g00001 675 SUPERFAMILY Protein kinase-like (PK-like) 319 626 IPR011009 -
Trme644g00001 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Trme644g00001 675 Pfam Protein kinase domain 335 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme644g00001 675 SMART serkin_6 334 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme644g00001 675 MobiDBLite consensus disorder prediction 651 666 - -
Trme644g00001 675 Gene3D Transferase(Phosphotransferase) domain 1 412 629 - -
Trme644g00001 675 MobiDBLite consensus disorder prediction 608 645 - -
Trme644g00001 675 MobiDBLite consensus disorder prediction 608 675 - -
Trme644g00001 675 Gene3D Phosphorylase Kinase; domain 1 304 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme644g00001 Trme-Chr644 37 2451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme644g00001 31 627 Receptor kinase-like Gene Family AT1G25390 33.713 2.92e-87 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trme644g00001 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme644g00001 - - psat:127115365 590.497