Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6446g00001 ATGATGGATAAATATAATAGAGCTGGGTGTAACGGATCAAGAAGAAGCAAGTTTGGAAAAAATCCAAAGAATGACAAGTCATTTCTATATATGGTGGATCGCATCTTCAAGCTCTCTACCACCACCACCACCACTACCTTGAATTTAGACAAAACAACATCTATCCTAGAAAGAGTTATGTTTATCTTAGAGAATGACCTTTGTGCTCTTTTAGAAGACCACATATCCAAAAATTGGAGACCAACACCACCACCACCACCCAGGAAATCGTCCTCCTTTGGTTCCCTTCAGTTTCAACTTCAAGATCATCATGAGAGGGAATCTCCAAAGCCCGGCAACCCAGATGATGAGGATGACGAGGATGACGGCTTATTGCCAACTTTCTCACCAGAAGACCTTTCCGTTCTAAACAAGATTGTGACTGTCATGATCAATGTGGGCTATCATACAGAGTGTTGCATGGCCTTTACCAATTTCAGACGAATTGCTTTCAAAACTGTGTTGCAAAAATTGGGATACACGTGCATGAGGATGGATGAGGTTTATAAAATGCAATGGGAGTTTTTGGAAGGAGAAATTGCCACATGGAACAGAGTGTTCCGGCATTGCACTTCCGTGCTCTTCAACTCTGAAAGAAAGCTATACAATTCAGTATTTTCAAATCAACCACATATTTCTAGAGGCATATTTAGTGTTATTGCCCAAGCTGTCATCGTCAACTTTCTTAATTTTGCACAAGCGGTTGTTTTAACCAAGCCATCGCCTGAAAAACTTTTCAAATTCCTTGATATGTATGAGACCTTAAGGGATGAAGTGGAGTCTGTCATCGTACTCATTAATGATGACGGTTCAGAGCAGTGTGCCAAAGATTTGGGGTACGAACTGGCTGCAGCAAAGCATGGGATCATAGAGGCTATTGTAGCAATGTTTTATGATTTGGAAAACTCCATTAAGGGTGACAATGAAAGGATTCCAATCCCCTACGGCGCGGTTCATCCATTAACTCGTTATGTAATGAATTATCTTAAATATGCATGTGAATACAAAGCGACTTTAGAGCAAGTGTTTTCCTCCCAATATTGTATGAATCATTATCTTTATATCGATAATCATAATAATAATAATAATAATAAGGGTACATCCACTACCACCACAAAGATTCAAGAAAATAATACATCATCAGAAGATCAAGAATTGGATGAGACGCCAAAGAAATCACCTTTTGTGGTTCAATTGATGACAATTATGGACCTTTTAGATGTAAATACTGAAAGAAAGTCCAAGCTATATAAGGATCCAGCTTTACGTTGTATTTTTCTAATGAACAATGGAAGATACATAGTACAAAAGATTAAAGGGTGTGATGATCTTCATGAGTCGATGGGCGACAATTGGTGTAGGAGGATGCAATCAAGTTTGAGGTTGCACCATAAGAGTTATCAGAGAGAGACTTGGAGCAAGGTGGTGCAGTGCCTCAACCCGGATGGTTTGCAACAACAGGGGAACAAAGTGTCTAAGCAAATATTGAGAGAGAGGTTTAAGTGCTTTAATTCCATGTTTGAAGAGATCCACAAGACACAAAGTAGCTGGATCGTAAGCGATGAACAACTTCAATCAGAGTTAAGAGTTTCAATATGTTCTTTGGTCATACCTGCTTATCGCTCCTTTATGGGAAGATTCAAACATCATCTTGAATCAGGCAAACATATTGACAAGTATATCAAGTATCATCCTGACGACCTTGAGACTTTGATTGACGATTTTTTTGTTGGAAATGCTATGTCCATGCCTCGAAGGAGAACATGA 1806 0.3909 MMDKYNRAGCNGSRRSKFGKNPKNDKSFLYMVDRIFKLSTTTTTTTLNLDKTTSILERVMFILENDLCALLEDHISKNWRPTPPPPPRKSSSFGSLQFQLQDHHERESPKPGNPDDEDDEDDGLLPTFSPEDLSVLNKIVTVMINVGYHTECCMAFTNFRRIAFKTVLQKLGYTCMRMDEVYKMQWEFLEGEIATWNRVFRHCTSVLFNSERKLYNSVFSNQPHISRGIFSVIAQAVIVNFLNFAQAVVLTKPSPEKLFKFLDMYETLRDEVESVIVLINDDGSEQCAKDLGYELAAAKHGIIEAIVAMFYDLENSIKGDNERIPIPYGAVHPLTRYVMNYLKYACEYKATLEQVFSSQYCMNHYLYIDNHNNNNNNKGTSTTTTKIQENNTSSEDQELDETPKKSPFVVQLMTIMDLLDVNTERKSKLYKDPALRCIFLMNNGRYIVQKIKGCDDLHESMGDNWCRRMQSSLRLHHKSYQRETWSKVVQCLNPDGLQQQGNKVSKQILRERFKCFNSMFEEIHKTQSSWIVSDEQLQSELRVSICSLVIPAYRSFMGRFKHHLESGKHIDKYIKYHPDDLETLIDDFFVGNAMSMPRRRT 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6446g00001 601 PANTHER EXOCYST COMPLEX PROTEIN EXO70 21 590 IPR004140 GO:0000145|GO:0006887
Trme6446g00001 601 SUPERFAMILY Cullin repeat-like 19 589 IPR016159 -
Trme6446g00001 601 MobiDBLite consensus disorder prediction 372 392 - -
Trme6446g00001 601 Pfam Exo70 exocyst complex subunit 195 587 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trme6446g00001 601 MobiDBLite consensus disorder prediction 1 23 - -
Trme6446g00001 601 Gene3D Exocyst complex component Exo70 15 599 - -
Trme6446g00001 601 MobiDBLite consensus disorder prediction 78 129 - -
Trme6446g00001 601 MobiDBLite consensus disorder prediction 372 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6446g00001 Trme-Chr6446 77 1882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6446g00001 16 600 EXO70 exocyst subunit family AT5G13150 47.020 6.30e-178 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6446g00001 K07195 - mtr:25485763 890.567