Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme64334g00001 GAGAAACTGCCCGAAACGATTGATCAAGGTGATACATTAGTTTTTGCTTCCAAAAAGGCCACTGTGGATGAAATTGAATCGCAATTGAGTCAGAGAGGTTTTAAAGTTGCTGCCCTGCATGGTGATAAGGATCAAGCTTCTCGTATGGATATTTTACAAAAGTTTAAATCTGGCACCTACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATAAAGTCAATTAAAACCGTGGTAAACTTTGATNTTGCTAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGCCGTGCCGGTGACAAGGATGGAGTTGCATACACTCTTATAACTCAAAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCACAGAGTTGATGGATCTTGCTATGAAGATTTTGTAG 447 0.4116 EKLPETIDQGDTLVFASKKATVDEIESQLSQRGFKVAALHGDKDQASRMDILQKFKSGTYHVLIATDVAARGLDIKSIKTVVNFDXAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSTELMDLAMKIL 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme64334g00001 148 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 144 IPR001650 -
Trme64334g00001 148 Gene3D - 1 147 IPR027417 -
Trme64334g00001 148 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 144 - -
Trme64334g00001 148 CDD SF2_C_DEAD 1 114 - -
Trme64334g00001 148 Pfam Helicase conserved C-terminal domain 7 104 IPR001650 -
Trme64334g00001 148 SMART helicmild6 23 104 IPR001650 -
Trme64334g00001 148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 145 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme64334g00001 Trme-Chr64334 3 534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme64334g00001 3 143 Eukaryotic Initiation Factors Gene Family AT1G72730 34.043 4.38e-24 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme64334g00001 K12835 - gmx:100805571 269.626