Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme643087g00001 AATATCCAGAAGGAGTCTACCCTTCACCTTGTGCTGCGTCTGAGGGGTGGTATGCAGATTTTTGTTAAGACCTTGACTGGGAAGACTATTACCCTGGAGGTGGAGAGCTCAGATACCATTGATAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATCCCACCTGATCAGCAGAGGTTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTT 258 0.4767 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme643087g00001 86 Pfam Ubiquitin family 20 86 IPR000626 GO:0005515
Trme643087g00001 86 Gene3D - 1 18 - -
Trme643087g00001 86 SMART ubq_7 18 86 IPR000626 GO:0005515
Trme643087g00001 86 SUPERFAMILY Ubiquitin-like 2 86 IPR029071 -
Trme643087g00001 86 PRINTS Ubiquitin signature 28 48 IPR019956 -
Trme643087g00001 86 PRINTS Ubiquitin signature 70 86 IPR019956 -
Trme643087g00001 86 PRINTS Ubiquitin signature 49 69 IPR019956 -
Trme643087g00001 86 PANTHER UBIQUITIN 1 19 - -
Trme643087g00001 86 Gene3D - 19 86 - -
Trme643087g00001 86 ProSiteProfiles Ubiquitin domain profile. 18 86 IPR000626 GO:0005515
Trme643087g00001 86 FunFam Polyubiquitin 18 86 - -
Trme643087g00001 86 ProSitePatterns Ubiquitin domain signature. 44 69 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme643087g00001 Trme-Chr643087 1 258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme643087g00001 18 86 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 4.26e-46 142