Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme64268g00001 ATGGCTCTACAGCAACCAAGCCGTGTAGATCCAAAACTCTGGCAGCGTTGCGCCGGCGACTCCATCAAAATACCAAAATTACATTCAAAAGTTTACTACTTCCCACAAGGTCACTTAGAACATTCCAATCCTTCTCCAAGCACTCAATCACTTTCCCTTATCAATGGTTATCGTCCATTCATTCCTTGTATCATCTCCGCCATTGATCTCCTCGCTGATCCACACACCGATGAGGTCTTCGCCAAATTACTCCTTACTCCCGTAGCTGACGGCACCATTGAACCTCGTGATGTTCCCTATGAAGATCAAGAAAACAACGTTGAGGTTGTTTCGTCTTTCAAGACTCTCACCCGATCTGATGCTAATAACGGCGGTGCATTCTCCGTACCACGTGGCTGCGCTAACAAGATCTTCCCGCCGCTTGATTTAAAAGCCAAACCGGCACCGTTTCAAGAACTTTCCTTTACCGATGTTCACGGTGAAGAATGGAAGTTTCGTCACATATACAGTGGGGCACCCCAGCGACACCTGATCACCTCCGGCTGGAGTAAGTTTGTGGACAAGAAGAAACTCGTTGTTGGTGACTCTTTAGTTTTCTTGAAAAATCCAGCCGGAAGGATCTTTGTCGGAATTCGCAGGAAGTTTGATGCCTCAAGAAGCGGAAAAATAAGGGAGAAAGCGGTTATGGAGGCAG 694 0.4697 MALQQPSRVDPKLWQRCAGDSIKIPKLHSKVYYFPQGHLEHSNPSPSTQSLSLINGYRPFIPCIISAIDLLADPHTDEVFAKLLLTPVADGTIEPRDVPYEDQENNVEVVSSFKTLTRSDANNGGAFSVPRGCANKIFPPLDLKAKPAPFQELSFTDVHGEEWKFRHIYSGAPQRHLITSGWSKFVDKKKLVVGDSLVFLKNPAGRIFVGIRRKFDASRSGKIREKAVMEA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme64268g00001 231 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 215 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme64268g00001 231 SMART B3_2 112 215 IPR003340 GO:0003677
Trme64268g00001 231 ProSiteProfiles B3 DNA-binding domain profile. 112 215 IPR003340 GO:0003677
Trme64268g00001 231 SUPERFAMILY DNA-binding pseudobarrel domain 111 214 IPR015300 -
Trme64268g00001 231 Gene3D - 111 215 IPR015300 -
Trme64268g00001 231 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677
Trme64268g00001 231 CDD B3_DNA 113 213 IPR003340 GO:0003677
Trme64268g00001 231 FunFam Auxin response factor 111 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme64268g00001 Trme-Chr64268 164 857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme64268g00001 8 213 B3 DNA Binding Superfamily AT1G77850 52.133 7.91e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme64268g00001 B3 1.5e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme64268g00001 - - mtr:11412789 272.707