Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6407g00001 ATGTCTAGGAGAAGTAGGAGCCAGAGCCGGAGCCCTTCACGTGGTTTTAGGTATTCAGATGTCGATGATAGGAACAGAATGGGGGCTGGCAGATCGACAAAACCTTGTAGAGATTTTGCTGTTGGGAACTGTAGAAGAGGCAGCCATTGCCATTTCCTTCACCATGATAACCAAAGTTATGAGGATAGCAGGGAAAGTAGACATAGGCAAGATGGACCCAGATATTCTAATCCCCGTGAGAGTGGGGATTATTCTCTTACAAATCGAAGATCTGATAAAGCTTGTATTAATTTTGCAAAGGGAAGGTGTAGAACGGGAGAATCATGCAGGTATGTACATCATGGCAAATCTGATGGGTTTGATAAAGTTTCCGCATATGAATCATCCAGGGAAAGGGATGTTGATAGAAGACACATGGATATTTCATTCAAGCAGGATGGTCAACATAATCCAAACCACAAGAGTAATATTCCTTGCAAATATTTTGCTCTTGGAAATTGTCTTTACGGTAAAGATTGTAGGTTTTCTCATGATAGACACTCATTTACTAGCCCTAGATTAAGGGATGATAGATCAAGGAGTAATCAAGGTGAAGATCAGGTGTTGGATAGACAAAAAATGAGCGATTCAGTTACTCCTAATGGAAGGCCAAGGGATGATAGATGGGTTTCAGATGGCAGTATGGCTGATGTAGATAAAGTTTGGGATGGTCCAAAGCAAAATGATTTAGTCGCCGTCTCTGATACAGCAAAGCTGATTGAGGACAAAAAAATTATAAGCGCTCCAGAACCTGGATTCATGACTTGGCCAACGAATGATGGATTGGATTATAGTTTAAACCAGAACAGAGTGCATAATGAATCACCGTTTTCAATTGATAAGAAGGAAGCCAACTGTCGGACGGAAGAAAATGCAGTTGACAACATTCTCCTTTCTCAGTCACTAGGTGGAGGCATTTGGCCTGGTGATGAAAAAATGTCTCCTGATTGGAATTATGGTGCGAGATCTTCCAGCCATATTAAAGACGAGGATGGGCATAATAAGCATCAAGTTGCTCCAGGTCAAGGACTAAATCAGAATGCTCAGAACATAACTGCTTCCCATGTTGTTGGACAGAGTCAAGCAACAGTTTCCATTGTTCCTCCGAGAGCAAGAATTATTGAAGGGTCTGGTAATCCTGTTTCCATGACATCCATCAAACCAGATCCTGCTATTGGATTGAAGCAGTATGATCCAATGT 1240 0.4161 MSRRSRSQSRSPSRGFRYSDVDDRNRMGAGRSTKPCRDFAVGNCRRGSHCHFLHHDNQSYEDSRESRHRQDGPRYSNPRESGDYSLTNRRSDKACINFAKGRCRTGESCRYVHHGKSDGFDKVSAYESSRERDVDRRHMDISFKQDGQHNPNHKSNIPCKYFALGNCLYGKDCRFSHDRHSFTSPRLRDDRSRSNQGEDQVLDRQKMSDSVTPNGRPRDDRWVSDGSMADVDKVWDGPKQNDLVAVSDTAKLIEDKKIISAPEPGFMTWPTNDGLDYSLNQNRVHNESPFSIDKKEANCRTEENAVDNILLSQSLGGGIWPGDEKMSPDWNYGARSSSHIKDEDGHNKHQVAPGQGLNQNAQNITASHVVGQSQATVSIVPPRARIIEGSGNPVSMTSIKPDPAIGLKQYDPM 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6407g00001 413 MobiDBLite consensus disorder prediction 1 15 - -
Trme6407g00001 413 SUPERFAMILY CCCH zinc finger 32 57 IPR036855 GO:0046872
Trme6407g00001 413 Gene3D - 30 119 - -
Trme6407g00001 413 ProSiteProfiles Zinc finger C3H1-type profile. 154 180 IPR000571 GO:0046872
Trme6407g00001 413 MobiDBLite consensus disorder prediction 16 31 - -
Trme6407g00001 413 MobiDBLite consensus disorder prediction 58 76 - -
Trme6407g00001 413 MobiDBLite consensus disorder prediction 181 225 - -
Trme6407g00001 413 Pfam RNA-binding, Nab2-type zinc finger 94 113 - -
Trme6407g00001 413 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 33 55 IPR000571 GO:0046872
Trme6407g00001 413 Gene3D - 130 189 - -
Trme6407g00001 413 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 3 388 - -
Trme6407g00001 413 MobiDBLite consensus disorder prediction 181 205 - -
Trme6407g00001 413 MobiDBLite consensus disorder prediction 1 38 - -
Trme6407g00001 413 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Trme6407g00001 413 MobiDBLite consensus disorder prediction 58 86 - -
Trme6407g00001 413 SUPERFAMILY CCCH zinc finger 154 178 IPR036855 GO:0046872
Trme6407g00001 413 ProSiteProfiles Zinc finger C3H1-type profile. 30 57 IPR000571 GO:0046872
Trme6407g00001 413 SMART c3hfinal6 91 115 IPR000571 GO:0046872
Trme6407g00001 413 SMART c3hfinal6 30 56 IPR000571 GO:0046872
Trme6407g00001 413 SMART c3hfinal6 154 179 IPR000571 GO:0046872
Trme6407g00001 413 Pfam CCCH-type zinc finger 158 178 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6407g00001 Trme-Chr6407 8 1647 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme6407g00001 zf-CCCH 4.8e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6407g00001 - K22909 gmx:100783856 437.573