Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme63912g00001 ATTGCAGAAAGCAATTCCTCCACTTCTAAACTTGAAGAGGAGCTTAAAATTGCTTCTAGGCTGCGAAAGTTCACTTTCAATGAACTTAAGTTGGCAACAAGAAATTTCCGGCCCGAGAGTTTTCTTGGCGAAGGTGGGTTTGGTTGTGTTTTCAAGGGTTGGATCGAAGAAAATGGAACTGCTGCAGTGAAACCAGGCACAGGGCTTACTGTCGCTGTAAAAACTCTTAACCATGATGGGCTTCAGGGTCATAAAGAATGGCTGGCTGAGGTAAATTTTCTTGGCGATCTCGTTCATCAAAATCTTGTTAAACTTGTAGGTTACTGCATTGAAGATGATCAAAGGCTGCTCGTGTATGAGTTCATGGCTCGGGGAAGCTTGGAAAATCACTTATTTAGGAGTAAGTTACTATTTTCTGACTAG 423 0.4208 IAESNSSTSKLEEELKIASRLRKFTFNELKLATRNFRPESFLGEGGFGCVFKGWIEENGTAAVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHQNLVKLVGYCIEDDQRLLVYEFMARGSLENHLFRSKLLFSD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme63912g00001 140 Pfam Protein tyrosine and serine/threonine kinase 41 134 IPR001245 GO:0004672|GO:0006468
Trme63912g00001 140 FunFam Serine/threonine-protein kinase BIK1 3 121 - -
Trme63912g00001 140 ProSitePatterns Protein kinases ATP-binding region signature. 42 74 IPR017441 GO:0005524
Trme63912g00001 140 SUPERFAMILY Protein kinase-like (PK-like) 14 135 IPR011009 -
Trme63912g00001 140 Gene3D Phosphorylase Kinase; domain 1 9 121 - -
Trme63912g00001 140 ProSiteProfiles Protein kinase domain profile. 36 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme63912g00001 140 PANTHER OS01G0588500 PROTEIN-RELATED 11 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme63912g00001 Trme-Chr63912 3 517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme63912g00001 22 132 Glycoside Hydrolase AT3G07070 54.054 3.07e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme63912g00001 PK_Tyr_Ser-Thr 1.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme63912g00001 - - var:108345452 268.085