Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme638g00001 ATGTTTCTCGTTGATTCTTGCTTTATTAGGTTCTCTAGTGCTGTGAATGTTATTCTTCAGAAGTTGTGTACTGTTCTTGGACTACTCAAGGATTTGTTGTTAATAGAGAGGTTGTCAGATAGTTGCATTTTACAACTTGTAAAAACAAGCATTTCAACATTCTTGGTTGATAACATTCAGCTCTTGCAATTGAAGGCAATTGGTTTACTCAGTGTGATATTCTATTTATACACACAACATCGCACTTATGTGTTAGATGAAATGCTTCACCTTCTTTGGAAATTACCGCATTCAAAGCGAGCTTTAAGGAATTATCACATACGTGAGGAAGAGCAAAGACAGATCCAGATGATTACTGCTTTGTTGATCCAATTAATTCATTGTAGTGCTAACCTTCCTGATACTTTAAGACAAGCATCAAGTGGTAACTCTGTATTGGAAGTCTCGGTTGATGCTAGTTATCCAACTAAATGCCGCAACGAAGTAAGAGAGGCCTGCTGTCTATTTTGGAGCCGTGTACTTCAGCGACTTGCAAGTGTAAAGGCTCAGGATGCTTCTGAACTGAAATCCATAATGGAGAATCTTGTTACTGATTTACTGACCACTCTAAATTTACCTGAGTATCCTGCTTCAGCTTCTATTCTAGAGGTTCTATGTGCTATACTAATTAATAATGCTGGGTCAAACTCCAAGGATTTCGCTGCACGTTCCATGGCAATTGATATTCTTGGCACTATTGCTGCAAGGTTGAAGCGTGATGCTGTGATTTGTAGCCGGGAAAAGTTCTGGGTACTTCAAGATTTACTTAGTGAGAATGCTGCTCCTCATTATCCAAAAGATACATGTTGTATCTGTTTGGGTGGAAGGATTGAAAATTTGTTCATATGTTCCGGCTGCAATAGGCTTTTTCATGCTGACTGCCTTGACATTAAAGAAAATGAAGTTCCCAACCGGAACTGGTACTGTCATATGTGCATCTGCTCAAAGCAACTGCTTGTATTACAATCATATTGCAATTCCCAGCGCAAGGATGATGTAAAAAAGAATCGTAAAGTGTCAATGGATGATTCTGCATTTTCTAACCATGAAATTGTTCAACAATTGCTTTTGAATCACCTTCAAGATGTCACCTCCGATGATGACCTGCATATTTTCATTTGCTGGTTTTATCTGTGCACATGGTATAAAAATGATCCAAAATCTCAGCAGAAGCCCATTTACTACTTTGCTAGGATGAAATCAAGAACCATAATACGGGATTCTGGTACTGTTTCCTCTATGCTGACACGAGATTCAATCAAGAAGATTACTCTAGCTTTAGGCCAAAAAAGTTCATTTAGTCGAGGCTTTGATAAGATTTTTCACACACTTTTGGTAAATATGAAGGAGAACTCTCCAGTTATTAGGGCTAAAGCTTTACGAGCAGTTAGCATCATTGTAGAGGCTGATCCAGAGGTATTGGGTGATAAACAAGTTCAAACATCTGTTGAAGGTAGGTTCTGTGACAGTGCAATATCTGTTAGAGAAGCAGCATTGGAACTTGTTGGTAGGCATATTGCTTCGCATCCAGATGTGGGTTTTAAGTATTTTGAGAAGATTACAGAGAGAATCAAAGATACTGGAGTTAGTGTTCGAAAACGAGCCATAAAAATTATTCGAGATATGTGCAGCTCAAATGCCAACTTCTCGGAGTTTACAAGAGCCTGCACAGAGATAATTTCTCGTGTTATTGATGATGAATCCAGTATCCAGGATCTTGTTTGCAAAACATTTTATGAGTTCTGGTTTGAGGAGCCTTCTGCTTCGCAAACTCAGGTCTTTGGAGATGGTAGTACTGTTCCACTCGAGGTAGCTAAGAAAACAGAGCAAATTGTTGAAATGTTGAAGAGAATGCCCAATAATCAGCTTCTTGTAACTGTAATAAAGCGCAACTTGACACTTGATTTTTTACCACAATCTACAAAAGCAATTGGGGTCAACCCAGTGTCCCTTGTAACAGTTCGTAAGCGTTGTGAGTTGATTTGCGAATGCTTGCTGGAGAAGATATTGCAGGTTGAAGAAATGGACAGTAATGAAGGGGAAAAACATGTGCTTCCGTATGTGCTAGTCTTGCATGCATTTTGTCTTGTGGACCCAACTCTCTGTGCACCAGCTTCTAACCCTTCCCACTTTGTCATTGCTTTGGAGCCATATCTGAAGACTCAG 2205 0.3932 MFLVDSCFIRFSSAVNVILQKLCTVLGLLKDLLLIERLSDSCILQLVKTSISTFLVDNIQLLQLKAIGLLSVIFYLYTQHRTYVLDEMLHLLWKLPHSKRALRNYHIREEEQRQIQMITALLIQLIHCSANLPDTLRQASSGNSVLEVSVDASYPTKCRNEVREACCLFWSRVLQRLASVKAQDASELKSIMENLVTDLLTTLNLPEYPASASILEVLCAILINNAGSNSKDFAARSMAIDILGTIAARLKRDAVICSREKFWVLQDLLSENAAPHYPKDTCCICLGGRIENLFICSGCNRLFHADCLDIKENEVPNRNWYCHMCICSKQLLVLQSYCNSQRKDDVKKNRKVSMDDSAFSNHEIVQQLLLNHLQDVTSDDDLHIFICWFYLCTWYKNDPKSQQKPIYYFARMKSRTIIRDSGTVSSMLTRDSIKKITLALGQKSSFSRGFDKIFHTLLVNMKENSPVIRAKALRAVSIIVEADPEVLGDKQVQTSVEGRFCDSAISVREAALELVGRHIASHPDVGFKYFEKITERIKDTGVSVRKRAIKIIRDMCSSNANFSEFTRACTEIISRVIDDESSIQDLVCKTFYEFWFEEPSASQTQVFGDGSTVPLEVAKKTEQIVEMLKRMPNNQLLVTVIKRNLTLDFLPQSTKAIGVNPVSLVTVRKRCELICECLLEKILQVEEMDSNEGEKHVLPYVLVLHAFCLVDPTLCAPASNPSHFVIALEPYLKTQ 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme638g00001 735 SMART PHD_3 281 326 IPR001965 -
Trme638g00001 735 SUPERFAMILY ARM repeat 364 602 IPR016024 -
Trme638g00001 735 ProSitePatterns Zinc finger PHD-type signature. 282 325 IPR019786 -
Trme638g00001 735 FunFam Sister chromatid cohesion protein 431 599 - -
Trme638g00001 735 PANTHER NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED 12 735 IPR033031 GO:0003682|GO:0010468|GO:0061780
Trme638g00001 735 ProSiteProfiles Zinc finger PHD-type profile. 279 328 IPR019787 -
Trme638g00001 735 Pfam PHD-finger 282 327 IPR019787 -
Trme638g00001 735 Pfam HEAT repeat associated with sister chromatid cohesion 474 515 IPR026003 -
Trme638g00001 735 Gene3D - 441 597 IPR011989 -
Trme638g00001 735 SUPERFAMILY FYVE/PHD zinc finger 279 333 IPR011011 -
Trme638g00001 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 365 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme638g00001 280 327 PHD Transcription Factor Family AT5G36670 47.917 1.16e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme638g00001 PHD 4.4e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme638g00001 K06672 - gmx:100792021 1160.59