Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme63878g00001 GTCTTGGCTAGTAAAACAAAAATTTACATGGTACTTGAGTATGTGACTGGAGAGGAGTTATTTGACAAAATTGCATCCAAGGGTAAACTTACAGAATGTGAAGGTAGAAAGTTGTTCCACCAGTTGATTGATGGTGTCAGCCACTGCCACAGTAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTACTCGTGGATGTCAAAGGGAATCTAAAGATAACTGATTTTGGCCTTAGTGCTTTACCCCAACAGTTT 258 0.407 VLASKTKIYMVLEYVTGEELFDKIASKGKLTECEGRKLFHQLIDGVSHCHSKGVFHRDLKLENVLVDVKGNLKITDFGLSALPQQF 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme63878g00001 86 Pfam Protein kinase domain 3 81 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme63878g00001 86 ProSitePatterns Serine/Threonine protein kinases active-site signature. 54 66 IPR008271 GO:0004672|GO:0006468
Trme63878g00001 86 ProSiteProfiles Protein kinase domain profile. 1 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme63878g00001 86 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 83 - -
Trme63878g00001 86 Gene3D Transferase(Phosphotransferase) domain 1 1 85 - -
Trme63878g00001 86 SUPERFAMILY Protein kinase-like (PK-like) 4 82 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme63878g00001 Trme-Chr63878 228 859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme63878g00001 1 86 CBL-interacting serine-threonine protein kinases AT3G17510 79.070 2.94e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trme63878g00001 Pkinase 2.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme63878g00001 K07198 - csav:115722823 153.295