Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme638286g00001 AAACACAATGGAAATATCTCTCTTGATGATGTTATTGAGATTGCGAAGGTGATGAAGCCTAGATCAATGGCGAAGGAACTTGGTGGTACTGTGAAGGAGATTCTTGGAACTTGTGTTTCTGTTGGTTGTACTGTTGATGGAAAAGATCCAAAGGATTTGCAACAAGAGATTGATGATGGTGATGTTGAGATTCCTTTGGAATAG 204 0.3922 KHNGNISLDDVIEIAKVMKPRSMAKELGGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGDVEIPLE 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme638286g00001 67 Gene3D - 1 65 IPR036769 -
Trme638286g00001 67 Pfam Ribosomal protein L11, RNA binding domain 4 45 IPR020783 GO:0003735|GO:0005840|GO:0006412
Trme638286g00001 67 ProSitePatterns Ribosomal protein L11 signature. 32 47 IPR020785 GO:0003735|GO:0005840|GO:0006412
Trme638286g00001 67 SUPERFAMILY Ribosomal protein L11, C-terminal domain 1 50 IPR036769 -
Trme638286g00001 67 FunFam Uncharacterized protein 31 65 - -
Trme638286g00001 67 PANTHER 60S RIBOSOMAL PROTEIN L12 1 52 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme638286g00001 Trme-Chr638286 1 204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme638286g00001 1 67 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 83.582 3.27e-37 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme638286g00001 K02870 - twl:120002230 130.568