Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme63826g00001 ATGGATTTGTTTTGCAACACTCTTCTGTTATCATCGGCTGTTCTCTTTGAGAATGTTGATCTGAATCGTTTGTCACTGATTCAAGAGGCTAACGCTAACTTTAAGGCTGGTGGATTGGGAATAAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATCGGTCAAACAAAGCCTGTTCACGTTTACAGGCTCGCAACTGCACAATCAGTAGAGGT 269 0.4238 MDLFCNTLLLSSAVLFENVDLNRLSLIQEANANFKAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEV 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme63826g00001 90 SMART helicmild6 2 72 IPR001650 -
Trme63826g00001 90 Pfam Helicase conserved C-terminal domain 35 72 IPR001650 -
Trme63826g00001 90 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 89 IPR027417 -
Trme63826g00001 90 Gene3D - 25 90 IPR027417 -
Trme63826g00001 90 CDD SF2_C_SNF 35 82 - -
Trme63826g00001 90 PANTHER HELICASE SRCAP-RELATED 35 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme63826g00001 Trme-Chr63826 1 451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme63826g00001 32 89 RAD5 or RAD16-like Gene Family AT5G05130 51.724 1.18e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme63826g00001 K19001 - rcu:8273428 120.168