Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme63677g00001 TCTGTTGAGGATGATTCAGAAACACCTNTAGCCAATGAAGACATTGTTTCGCAGCTGGTTTCTATGGGCTTTAACCAGATTCATTGTCAAAAAGCTGCTATAAATACATCAAATGCTGGAGTAGAAGAGGCAATGACTTGGTTACTATCTCACATGGATGATCCAGATATTGATGCTCCTATTTCGAAAGGGAGTGGCTCTGAAAGTGTTGACCAGTCAAAAGTTGATACGCTAATTTCATTTGGATTTCAAGACGACGTTGCTCGAAAGGCACTGAAGGCATCGGGTGGTGACATAGAGAAAGCAACAGACTGGATCTTTAGCAATCCTGATGCATCCGTTTCCAACATGGATGCTACTGCATCAAGCACTACATCTGGTCCAAATGATGCTGACTTACCTGATGGAGGAGGAAGTGAGTTGCTTTCACATCTTTATT 439 0.4214 SVEDDSETPXANEDIVSQLVSMGFNQIHCQKAAINTSNAGVEEAMTWLLSHMDDPDIDAPISKGSGSESVDQSKVDTLISFGFQDDVARKALKASGGDIEKATDWIFSNPDASVSNMDATASSTTSGPNDADLPDGGGSELLSHLY 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme63677g00001 146 MobiDBLite consensus disorder prediction 109 130 - -
Trme63677g00001 146 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 69 109 IPR015940 -
Trme63677g00001 146 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 10 51 IPR015940 -
Trme63677g00001 146 PANTHER UBX DOMAIN-CONTAINING PROTEIN 1 13 64 - -
Trme63677g00001 146 FunFam Ubiquitin carboxyl-terminal hydrolase 9 51 - -
Trme63677g00001 146 SMART uba_6 12 50 IPR015940 -
Trme63677g00001 146 SMART uba_6 71 108 IPR015940 -
Trme63677g00001 146 SUPERFAMILY UBA-like 36 114 IPR009060 GO:0005515
Trme63677g00001 146 Gene3D - 1 64 - -
Trme63677g00001 146 FunFam Ubiquitin carboxyl-terminal hydrolase 52 114 - -
Trme63677g00001 146 SUPERFAMILY UBA-like 3 61 IPR009060 GO:0005515
Trme63677g00001 146 CDD UBA1_atUBP14 12 56 - -
Trme63677g00001 146 MobiDBLite consensus disorder prediction 109 146 - -
Trme63677g00001 146 Gene3D - 65 133 - -
Trme63677g00001 146 Pfam UBA/TS-N domain 12 48 IPR015940 -
Trme63677g00001 146 Pfam UBA/TS-N domain 71 106 IPR015940 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme63677g00001 8 58 C2H2 Transcription Factor Family AT1G04850 33.333 5.24e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme63677g00001 K11836 - gmx:100816664 213.386