Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme63653g00001 ATGTATGGACACCAAATATCGTGCAAATGGACTATCTCAGCTGATGGCACTCCTGAGCATCGTGTGTTGAGATCTGCAATTTTTTTGGAATATGTGGAAGCGGGTTCCTTAAAAACCTATCTAAAGGAGTTGTCAGAAGCTGGTGAAAAGCATGTTCCTGTGGAGTTAGCCTTGTATATTGCCAAAGATGTCTCATGTGCTTTGTCGGAGCTGCACTCAAAGCACATAATTCACCGTGACATAAAAAGTGAAAACATTCTGTTTGATTGTGATAGGAANNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGGAACACCTCCTCCTTGTGTGTGTGTTGGAACACCTCGATGGATGGCTCCGGAGGTCGTGCGGACTATGTATAAAAAGAACACTTATGGATTG 465 0.3441 MYGHQISCKWTISADGTPEHRVLRSAIFLEYVEAGSLKTYLKELSEAGEKHVPVELALYIAKDVSCALSELHSKHIIHRDIKSENILFDCDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPPPCVCVGTPRWMAPEVVRTMYKKNTYGL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme63653g00001 155 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 124 155 - -
Trme63653g00001 155 Pfam Protein kinase domain 26 89 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme63653g00001 155 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Trme63653g00001 155 ProSiteProfiles Protein kinase domain profile. 1 155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme63653g00001 155 Gene3D Transferase(Phosphotransferase) domain 1 16 154 - -
Trme63653g00001 155 Coils Coil 90 92 - -
Trme63653g00001 155 SUPERFAMILY Protein kinase-like (PK-like) 22 148 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme63653g00001 Trme-Chr63653 156 702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme63653g00001 27 142 MAP Kinase Kinase Kinase AT4G31170 29.310 9.44e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Trme63653g00001 Pkinase 1.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme63653g00001 - - tpra:123913087 236.113