Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme636392g00001 ATGGGCCAAATCCACCATCTCAATGTTGTCTGTTTGCTTGGATTTTGCGCTGATGGATTTCACCGTGCTCTAGTCTACAATTTCTTCCCAAATGGTTCGTTGCAAAAATTCATTTCTCCTCCGAGCAACGAAGATAGTTTCCTTGGATGGGACAAGTTGCAGAAAATTGCTCTCGGCATAGCCAATGGAATCGAGTATCTTCATCAAG 208 0.4327 MGQIHHLNVVCLLGFCADGFHRALVYNFFPNGSLQKFISPPSNEDSFLGWDKLQKIALGIANGIEYLHQ 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme636392g00001 69 Gene3D Transferase(Phosphotransferase) domain 1 1 69 - -
Trme636392g00001 69 SUPERFAMILY Protein kinase-like (PK-like) 1 68 IPR011009 -
Trme636392g00001 69 Pfam Protein tyrosine and serine/threonine kinase 1 69 IPR001245 GO:0004672|GO:0006468
Trme636392g00001 69 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 69 IPR045874 GO:0004672
Trme636392g00001 69 ProSiteProfiles Protein kinase domain profile. 1 69 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme636392g00001 Trme-Chr636392 19 226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme636392g00001 1 69 Receptor kinase-like Gene Family AT1G66910 53.623 3.06e-21 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme636392g00001 PK_Tyr_Ser-Thr 6.9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme636392g00001 - - mtr:25482309 130.183