Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme63565g00001 AAACTTGGACATGGTGGTTTTGGTACAGTATACAAGGGGAAACTGCAAGATGGTCAGGAAATAGCGGTTAAAAGACTTTCTAGAGCATCTGGACAAGGGTTGGAAGAATTCATGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACCGCAATCTTGTACGACTTCTTGGCTGTTGTATTGAAGGCGACGAGAAGATGTTGATGTATGAGTATATGCCAAACAAAAGTTTGGATGCATTCATCTTTGATCCATCAAAAAATAAACTCCTAGATTGGAGGACACGGTATAACATTATCGAAGGAATAGCTCGAGGATTGCTATATCTTCACAGAGATTCCAGATTAAGAATTATTCATAGAGATTTGAAGGCAAGTAATGTCTTGTTAGACGAGGAGCTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTCGGCGGCGGAGATGATCCAGTCAATACTAGCAGGATTGTTGGAACTTAG 486 0.3971 KLGHGGFGTVYKGKLQDGQEIAVKRLSRASGQGLEEFMNEVVVICKLQHRNLVRLLGCCIEGDEKMLMYEYMPNKSLDAFIFDPSKNKLLDWRTRYNIIEGIARGLLYLHRDSRLRIIHRDLKASNVLLDEELNPKISDFGMARIFGGGDDPVNTSRIVGT 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme63565g00001 161 ProSitePatterns Protein kinases ATP-binding region signature. 2 24 IPR017441 GO:0005524
Trme63565g00001 161 SUPERFAMILY Protein kinase-like (PK-like) 1 161 IPR011009 -
Trme63565g00001 161 FunFam Uncharacterized protein 7 71 - -
Trme63565g00001 161 Gene3D Phosphorylase Kinase; domain 1 2 72 - -
Trme63565g00001 161 SMART serkin_6 1 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme63565g00001 161 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 72 161 - -
Trme63565g00001 161 Pfam Protein tyrosine and serine/threonine kinase 1 146 IPR001245 GO:0004672|GO:0006468
Trme63565g00001 161 Gene3D Transferase(Phosphotransferase) domain 1 73 161 - -
Trme63565g00001 161 ProSiteProfiles Protein kinase domain profile. 1 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme63565g00001 161 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Trme63565g00001 161 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme63565g00001 Trme-Chr63565 1 753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme63565g00001 2 161 Receptor kinase-like Gene Family AT4G11530 69.375 1.04e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme63565g00001 PK_Tyr_Ser-Thr 2.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme63565g00001 - - tpra:123892366 323.939