Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6343g00001 ATGGGAAATGCAGCATGTGCTGGATTAACAGTCATGTTCATTATTCTCTCAATTGGTCACATCTCAGGTGCACATCTCAATCCATCACTCACCATCGCGTTCGCTGCGTTTCGTCATTTTCCTTGGGCACATGTTCCTGCCTACATTGCGGCACAAGTCTCCGCTTCGATCTGCGCTTGCTATGCTCTCAAAGTTGTTTACCATCCTTTCCTCTCTGGTGGTGTCACTGTCCCTACTGTTGACGTTGGACAAGCTTTTGCAACTGAGTTTATCATCACTTTTATTCTCTTGTTTGTTGTCACTGCTGTTGCTACTGATTCCCGCGCGGTTGGTGAATTGGCTGGTATTGCTGTTGGGGCTACAGTTTTGCTCAACATTCTTATCTCAGGGCCAACAAGTGGTGGTTCGATGAATCCGGTGCGCACCTTAGGTCCAGCCGTTGCAGCAGGAAATTACAAGCATATCTGGATATATTTGGTGGCGCCAACGCTTGGTGCTCTCGCTGGTTCTGGACCTTCACTACACCCCACTGCTCATGTTTCAAGCTTCTTGTATGATATTATAGAAACCTAA 573 0.4712 MGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWAHVPAYIAAQVSASICACYALKVVYHPFLSGGVTVPTVDVGQAFATEFIITFILLFVVTAVATDSRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGSGPSLHPTAHVSSFLYDIIET 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6343g00001 190 ProSitePatterns MIP family signature. 25 33 IPR022357 -
Trme6343g00001 190 PANTHER AQUAPORIN NIP2-1 1 171 IPR034294 -
Trme6343g00001 190 PRINTS Major intrinsic protein family signature 156 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme6343g00001 190 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme6343g00001 190 PRINTS Major intrinsic protein family signature 88 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme6343g00001 190 PRINTS Major intrinsic protein family signature 7 31 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme6343g00001 190 PRINTS Major intrinsic protein family signature 119 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme6343g00001 190 Pfam Major intrinsic protein 5 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme6343g00001 190 Gene3D Glycerol uptake facilitator protein. 1 173 IPR023271 -
Trme6343g00001 190 SUPERFAMILY Aquaporin-like 3 170 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6343g00001 Trme-Chr6343 966 1909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6343g00001 1 170 Major Intrinsic Protein MIP AT4G10380 82.941 3.07e-100 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6343g00001 K09874 - gmx:100804356 330.487