Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme63358g00001 ATGGAGACAAGAAGGTCAGAGGGCAAGAGGAGTTTGAGATACAAAGAGGAAGATGAAGAAGAAGAGGAAGATGATATGGATTTTGAAGAGGAAGAAGATGGTAGAAGGAAGAGGGTAGTGACAGATCTATATAGCAACAAGAGAGGTTCTAACAAAGCTGGTGGCAGCTCAAATATTACACCTTGTTGTCAAGTTGAGAATTGTGATGCTGATCTGAGTGAAGCTAAACAGTATCACCGGAGACATAAGGTTTGTGAGTATCATGCTAAGGCACCTGCCGTACACATTGCAGGGATGCAGCAAAGGTTTTGTCAGCAATGTAGCAGGTTTGACAAACCCTAA 342 0.4269 METRRSEGKRSLRYKEEDEEEEEDDMDFEEEEDGRRKRVVTDLYSNKRGSNKAGGSSNITPCCQVENCDADLSEAKQYHRRHKVCEYHAKAPAVHIAGMQQRFCQQCSRFDKP 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme63358g00001 113 Gene3D - 59 112 IPR036893 GO:0003677|GO:0005634
Trme63358g00001 113 MobiDBLite consensus disorder prediction 1 36 - -
Trme63358g00001 113 SUPERFAMILY SBT domain 61 111 IPR036893 GO:0003677|GO:0005634
Trme63358g00001 113 MobiDBLite consensus disorder prediction 1 16 - -
Trme63358g00001 113 Coils Coil 12 32 - -
Trme63358g00001 113 ProSiteProfiles Zinc finger SBP-type profile. 60 113 IPR004333 GO:0003677
Trme63358g00001 113 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 110 IPR044817 GO:0003677
Trme63358g00001 113 Pfam SBP domain 63 111 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme63358g00001 Trme-Chr63358 470 811 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme63358g00001 47 110 SBP-box Gene Family AT2G33810 64.062 2.25e-25 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trme63358g00001 SBP 3.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme63358g00001 - - vvo:131643517 145.591