Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6334g00001 ATGTTGTGGCCATTCAAGGTCATTGCCGGTGTGAATGACAAACCAATGATTTCCCTCAAGTGCAAGGGAAAGGAGAAACACTTTTGTGCGGAGGAAATCTCGTCTATGGTACTCACAAAGATGCGGGAGATTGTAGAGGCATATTTGGAAACAAAAGTTAAGAATGCAGTTATTACTGTGCCTGCTTATTTCAACGATTCTCGACGAAAATCCACCATAGATGCTGGTGCCATTGCTGGTCTTAATGTTTTGAAGATAATCAATGAACCAACTGCTGCAGCTATTGCACATGGCCTTGACAAGAGAACTAATTGTGATAAGGTCTTCCAAGTTAAGGCCACCAGTGGAAACATCACCTCGGAGGAGTGGACTTCGATAACAGAATGGATGGACAAGAGTAGTGTTCATGATGTTGTCCTTGTTGGCGGATCTTCTAGGATTCCCAAAGTGCAACAGCTATTGCTAGACTTCTTCAAGCGGAAGGAGTTATGTAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTCTCCAAGCAGCTTTGTTGAGTGGAAACATTAAGAATGTTCCAAGCTTGGTGCTGATAGATGTTGCACCTCTCTCAATAGCTCGCGGTCATCCTTATGATATATGCTTTGATATCGATCAAAACAGTATTTTAACAGTTTCTGCTATGGATAAATCCACTGGCAGTAAGAACTATATTACAATATCCAATGACAAAGGAAGGTTGTCGATTGAAGAAATTGGAAGATTGATTCAAGAAGCCGAGGCTTTCTGTATTGCAGATAAGAAAAAGGCAGAAGTAATGAATGCATTAGACTACTGTGTTTACAAATTTAGGAATGCGTTGAAGAAGAAGGAAATTAATTCAAAGATTTCTTCACAAGAAAACAAGAAGATCAATACTGCAATTACAAAGGCTATAAATTTGCTTGATGAAAATAACCATCAGAATGAAATTAATGTTCTTAAGGATCACTTGAATGAGCTTGAGAGTATGTACAAGCGCATTATAGCCAAGTCCCACTAG 1038 0.3979 MLWPFKVIAGVNDKPMISLKCKGKEKHFCAEEISSMVLTKMREIVEAYLETKVKNAVITVPAYFNDSRRKSTIDAGAIAGLNVLKIINEPTAAAIAHGLDKRTNCDKVFQVKATSGNITSEEWTSITEWMDKSSVHDVVLVGGSSRIPKVQQLLLDFFKRKELCKSINPDEAVAYGAALQAALLSGNIKNVPSLVLIDVAPLSIARGHPYDICFDIDQNSILTVSAMDKSTGSKNYITISNDKGRLSIEEIGRLIQEAEAFCIADKKKAEVMNALDYCVYKFRNALKKKEINSKISSQENKKINTAITKAINLLDENNHQNEINVLKDHLNELESMYKRIIAKSH 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6334g00001 345 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 270 344 IPR029048 -
Trme6334g00001 345 SUPERFAMILY Actin-like ATPase domain 130 186 IPR043129 -
Trme6334g00001 345 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 205 273 IPR029047 -
Trme6334g00001 345 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 193 272 IPR029047 -
Trme6334g00001 345 FunFam Endoplasmic reticulum chaperone BiP 10 118 - -
Trme6334g00001 345 Pfam Hsp70 protein 211 342 IPR013126 GO:0005524|GO:0140662
Trme6334g00001 345 Pfam Hsp70 protein 3 105 IPR013126 GO:0005524|GO:0140662
Trme6334g00001 345 Pfam Hsp70 protein 130 204 IPR013126 GO:0005524|GO:0140662
Trme6334g00001 345 PANTHER HEAT SHOCK PROTEIN 70KDA 211 308 IPR013126 GO:0005524|GO:0140662
Trme6334g00001 345 Gene3D - 165 182 - -
Trme6334g00001 345 SUPERFAMILY Actin-like ATPase domain 2 101 IPR043129 -
Trme6334g00001 345 ProSitePatterns Heat shock hsp70 proteins family signature 3. 138 152 IPR018181 -
Trme6334g00001 345 Gene3D - 273 345 IPR029048 -
Trme6334g00001 345 Gene3D - 1 126 - -
Trme6334g00001 345 Gene3D - 130 164 - -
Trme6334g00001 345 Coils Coil 316 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6334g00001 Trme-Chr6334 5 1604 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6334g00001 246 345 Calmodulin-binding Proteins AT5G02500 37.864 4.02e-10 58.9