Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme6327g00001 ATAGAGCAGCCAGTCATGCCGTTTGGTTTGGTCTCAGCCTGGAACAAGCGCCGAAGAAGCAAGTCTCAAGATCATACAGATCCATGGATTTACAAACCTGCGCAACTTTGGCAACTTGATGATAAATCGCCGCGTCCTACAAAGAAGTTGCATGGATCAACCGTTTTTACACTCAAAGAGATGGAAGAGGCAACATGTTCATTCAGTGAAGAAAATCTGCTTGGAAAGGGAGGATTTGGCAAAGTCTACCGAGGCACTTTGCGATCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGCTTCCGGCAATTAAAGAAGCAGAGGGGGAACGTGAATTCCGAGTTGAAGTTGACATTTTGAGCAGACTGAGCCACCCAAACCTTGTTTCTTTGATAGGCTACTGTGCTGATGGAAAGCATAGATTCCTAGTATATGGATATATGCTTAATGGAAACCTGCAAGATCATTTGAATGGAATTGGAGAAAGAAACATGGATTGGCCTCGAAGACTACAGGTGGCATTGGGAGCTGCAAAAGGGCTTGCTTATCTCCATTCAAGTTCTGATGTTGGAATTCCTATTGTTCATAGAGATTTCAAATCGACCAACATTCTCTTAGATGCCAACTTTGAAGCAAAGATATCTGATTTTGGGCTCGCCAAGTTAATGCCAGAAGGACAGGAGACACATGTGACTGCCAGAGTGCTTGGCACCTTTGGTTACTTTGATCCCGAGTATACATCGGTACGCATCTATGTCTATGCCATAACCCCCATCCCCATGGCCAAAAAAAGTATCTTCCCTTGCTTCAACTAA 813 0.4403 IEQPVMPFGLVSAWNKRRRSKSQDHTDPWIYKPAQLWQLDDKSPRPTKKLHGSTVFTLKEMEEATCSFSEENLLGKGGFGKVYRGTLRSGEVVAIKKMELPAIKEAEGEREFRVEVDILSRLSHPNLVSLIGYCADGKHRFLVYGYMLNGNLQDHLNGIGERNMDWPRRLQVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNILLDANFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSVRIYVYAITPIPMAKKSIFPCFN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme6327g00001 270 Gene3D Phosphorylase Kinase; domain 1 38 146 - -
Trme6327g00001 270 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Trme6327g00001 270 FunFam serine/threonine-protein kinase PBS1-like 37 146 - -
Trme6327g00001 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Trme6327g00001 270 FunFam Os07g0541700 protein 147 237 - -
Trme6327g00001 270 SUPERFAMILY Protein kinase-like (PK-like) 49 249 IPR011009 -
Trme6327g00001 270 Gene3D Transferase(Phosphotransferase) domain 1 147 255 - -
Trme6327g00001 270 ProSiteProfiles Protein kinase domain profile. 68 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme6327g00001 270 Pfam Protein kinase domain 69 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme6327g00001 270 PANTHER OS01G0750732 PROTEIN 36 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme6327g00001 Trme-Chr6327 351 1630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme6327g00001 51 260 Receptor kinase-like Gene Family AT3G58690 47.297 2.07e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Trme6327g00001 Pkinase 1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme6327g00001 - - gmx:100777910 468.003