Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme63245g00001 GAAACTGTAAAAGACAACTGTGAGAGTAGAAAAAAGGGAAAGCAGTTAACAACTTCAACAGCCAAGGCTTCTGGGAAGAATGCCAAACAGGGGTCTCAAGCTTCTGATCCGCCTAATGAGGGATACGTACATGTCAGAGCTCGCCGTGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTGAGGAGAGAAAAGATCAGTGAAAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAACAAGGTCACTGGCAAGGCGGTGATGCTAGACGAAATCATTAATTATGTACAGTCTCTTCAACAACAAGTTGAGAAAATRACATTTGTTCAAATTCTGATATGCTACAGTGCTATAGCTTCTGTTTGA 372 0.4194 ETVKDNCESRKKGKQLTTSTAKASGKNAKQGSQASDPPNEGYVHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQQQVEKXTFVQILICYSAIASV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme63245g00001 123 MobiDBLite consensus disorder prediction 1 59 - -
Trme63245g00001 123 Pfam Helix-loop-helix DNA-binding domain 54 102 IPR011598 GO:0046983
Trme63245g00001 123 Gene3D - 51 112 IPR036638 GO:0046983
Trme63245g00001 123 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 101 IPR011598 GO:0046983
Trme63245g00001 123 SMART finulus 57 107 IPR011598 GO:0046983
Trme63245g00001 123 FunFam Basic helix-loop-helix transcription factor 48 115 - -
Trme63245g00001 123 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 8 106 IPR024097 GO:0006355
Trme63245g00001 123 MobiDBLite consensus disorder prediction 13 37 - -
Trme63245g00001 123 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 109 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme63245g00001 Trme-Chr63245 55 720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme63245g00001 1 106 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 72.642 2.44e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme63245g00001 HLH 4.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme63245g00001 - - tpra:123921399 197.593